Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 5.2e-145 517.7 261 100.0
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 6.4e-143 510.8 256 100.0
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 90.8
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 5.1e-132 474.6 260 92.3
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 90.8
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 88.1
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 88.1
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 88.5
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.7
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.7
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 87.4
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 87.4
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.4
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.4
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.7
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 87.4
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 87.7
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 87.0
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 87.0
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 87.4
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 86.6
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 87.7
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 87.7
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 87.0
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 87.0
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 87.0
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 86.6
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 87.4
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 9.9e-128 460.3 260 87.7
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.3e-127 459.9 260 86.9
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.3e-127 459.9 260 86.9
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 87.0
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 87.7
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 1.7e-127 459.5 258 88.4
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.6
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.2
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.6
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 87.7
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 87.0
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 87.0
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 2.9e-127 458.8 260 87.7
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 87.0
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 87.0
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 87.4
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 4.9e-127 458.0 260 87.3
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 6.4e-127 457.6 260 86.5
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 85.8
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 85.8
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 8.4e-127 457.2 260 86.9
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 8.4e-127 457.2 260 86.5
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 86.2
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.1e-126 456.8 259 86.9
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.1e-126 456.8 259 86.9
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 87.0
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 87.0
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.4e-126 456.4 261 85.8
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.9e-126 456.1 260 86.9
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 86.6
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 87.0
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 85.1
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 85.1
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 86.6
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 86.6
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 85.8
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 86.6
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 85.8
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 84.7
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 87.0
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 85.8
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 85.8
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 85.4
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.6e-125 453.0 261 85.4
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 85.8
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 86.6
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 3.5e-125 451.8 261 85.8
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 3.5e-125 451.8 261 85.1
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 85.4
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 85.4
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 6.0e-125 451.1 261 85.1
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 6.0e-125 451.1 261 84.7
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 6.0e-125 451.1 261 84.7
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 84.7
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 84.7
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 85.8
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 85.4
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.7e-124 449.5 261 85.1
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.7e-124 449.5 261 84.3
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 3.0e-124 448.7 261 84.7
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 3.0e-124 448.7 261 83.9
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 3.9e-124 448.4 261 85.4
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 3.9e-124 448.4 261 85.1
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 3.9e-124 448.4 261 83.9
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 3.9e-124 448.4 265 84.2
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 5.1e-124 448.0 269 84.0
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 83.5
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 83.9
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 85.4
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 8.6e-124 447.2 261 83.9
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 8.6e-124 447.2 264 84.8
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.1e-123 446.8 261 83.9
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.1e-123 446.8 261 84.3
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.9e-123 446.0 256 85.9
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 84.7
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 84.7
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 84.7
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 3.3e-123 445.3 285 79.6
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 83.5
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 84.3
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 84.3
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 84.3
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 83.5
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 85.4
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 8.1e-122 440.7 259 84.6
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 83.9
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 82.0
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.1e-121 440.3 261 82.8
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 3.1e-121 438.7 261 83.5
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.2e-120 436.8 261 81.6
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 1.3e-119 433.3 261 82.4
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.3e-119 433.3 261 81.2
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 1.3e-119 433.3 261 82.8
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 1.7e-119 433.0 261 80.8
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 9.3e-118 427.2 261 79.7
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 9.3e-118 427.2 276 79.0
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.7e-117 425.6 277 78.7
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 3.5e-117 425.2 261 81.6
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 6.6e-116 421.0 240 86.7
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 4.0e-113 411.8 261 78.5
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 4.0e-113 411.8 261 78.5
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 5.8e-112 407.9 261 75.1
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.8e-111 405.2 241 83.8
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-110 403.7 241 83.4
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 5.4e-110 401.4 222 90.1
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 3.9e-108 395.2 261 75.9
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.6e-108 394.4 261 77.8
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 1.5e-107 393.3 261 74.7
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.8e-106 389.0 266 74.8
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.2e-104 383.6 261 77.0
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 1.3e-103 380.2 213 86.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.4e-102 376.7 309 68.3
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.0e-100 370.5 261 74.3
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 2.3e-100 369.4 201 89.1
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 3.0e-100 369.0 254 74.8
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 5.1e-100 368.2 240 77.1
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 6.2e-98 361.3 337 59.3
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.2e-95 352.8 199 86.9
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 2.5e-94 349.4 195 84.1
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 6.9e-89 331.3 260 62.3
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.2e-88 330.5 257 70.8
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 6.3e-82 308.1 177 83.6
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 3.8e-79 298.9 161 89.4
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 1.3e-71 273.9 229 59.4
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 2.4e-65 253.1 242 59.1
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-58 230.7 142 82.4
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 2.2e-58 229.9 143 81.8
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.0e-55 218.8 113 91.2
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.2e-52 208.8 135 80.0
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 7.7e-48 194.9 98 91.8
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.3e-39 167.5 109 78.0
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.7e-39 167.2 271 43.9
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 2.5e-38 163.3 135 65.2
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 5.6e-38 162.2 108 75.9
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 4.7e-37 159.1 196 48.5
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.2e-35 154.5 92 82.6
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 9.8e-35 151.4 197 46.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 4.1e-33 146.0 100 76.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 4.9e-26 122.5 81 77.8
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 7.0e-25 118.6 92 65.2
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.5e-19 100.9 64 78.1
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.8e-19 99.0 111 51.4
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 1.3e-10 71.2 81 49.4
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 2.9e-10 70.1 56 66.1
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 6.4e-10 68.9 85 47.1
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 7.1e-09 65.5 62 61.3
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 7.8e-08 62.0 52 65.4
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-07 61.2 38 73.7
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.7e-07 60.8 42 71.4
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 6.6e-07 58.9 34 79.4
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 7.3e-06 55.5 59 47.5


User provided reference genes

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