Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1869.0 990 100.0
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1686.0 911 98.0
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1661.7 1021 86.6
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1386.7 1017 73.9
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1360.1 1011 71.9
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1355.5 972 74.0
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1337.4 1017 70.6
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1323.1 1017 68.4
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1322.4 1025 68.3
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1320.8 996 70.0
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1312.0 1011 69.5
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1310.4 1021 69.0
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1308.9 1014 68.8
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1306.6 1017 68.1
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1306.6 1014 69.4
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1306.2 1021 68.4
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1305.0 1014 67.1
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1303.1 1025 67.9
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1302.7 1018 67.4
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1302.0 1017 67.6
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1298.5 1016 68.0
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1298.1 1018 67.2
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1297.7 1018 67.2
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1297.0 1033 67.5
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1294.6 1017 66.5
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1293.1 1023 68.1
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1289.2 1014 68.4
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1288.9 1025 68.0
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1287.7 1012 67.9
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1287.7 1001 69.2
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1287.3 996 69.1
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1283.5 1013 68.6
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1282.7 1019 67.2
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1282.7 993 67.9
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1280.0 1027 66.7
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1279.2 1014 66.9
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1278.1 1002 68.3
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1274.2 995 67.5
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1273.8 1008 66.7
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1272.7 1045 66.0
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1272.3 1031 66.3
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1272.3 1015 66.2
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1271.9 1022 66.2
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1269.2 1016 66.7
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1265.0 999 65.9
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1263.8 995 67.0
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1263.1 1016 66.4
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1262.7 1020 65.2
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1261.1 1019 66.0
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1259.6 1002 67.7
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1258.0 1036 65.9
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1256.5 1015 66.0
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1255.0 1054 64.4
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1253.0 996 65.7
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1251.5 1000 66.3
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1246.5 1023 65.5
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1246.1 1023 66.0
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1242.6 1012 65.2
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1241.9 999 65.0
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1239.6 1026 64.4
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1239.2 1008 65.8
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1237.2 1015 64.4
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1235.3 977 66.5
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1234.9 978 65.6
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1234.6 978 65.6
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1232.6 1013 64.3
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1232.2 1010 65.6
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1232.2 1013 64.5
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1231.1 1007 66.2
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1230.7 977 65.6
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1229.9 1018 65.0
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1228.8 977 65.5
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1226.5 1016 64.3
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1226.5 1032 63.2
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1226.1 1048 64.0
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1224.2 1016 64.1
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1224.2 975 65.8
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1223.8 1001 65.1
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1222.6 947 67.4
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1221.5 1016 63.8
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1219.5 1016 63.9
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1214.1 948 67.3
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1207.6 1003 63.7
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1206.4 1050 62.7
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1202.2 1024 62.5
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1201.4 1082 61.2
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1200.3 940 66.3
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1190.6 994 62.8
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1190.3 1019 63.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1184.1 1048 61.2
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1182.2 1040 61.5
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1181.0 1005 63.5
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1178.3 940 65.0
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1174.8 1029 62.7
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1162.9 1022 62.1
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1162.5 996 62.8
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1160.2 966 62.5
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1118.2 894 67.0
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1116.3 1019 60.2
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1110.5 793 72.9
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1107.4 1032 57.6
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1099.3 849 67.0
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 1.4e-311 1073.2 787 70.6
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 4.7e-311 1071.2 951 58.8
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 2.5e-309 1065.4 784 71.2
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 5.9e-306 1054.3 1015 57.2
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 5.9e-290 1001.1 961 56.2
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.5e-288 996.5 956 54.6
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 3.3e-285 985.3 976 52.2
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 3.8e-281 971.8 941 54.8
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 3.7e-276 955.3 703 71.3
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 3.4e-269 932.2 941 52.9
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 1.6e-263 913.3 831 59.0
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.3e-252 874.4 698 66.5
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.2e-237 827.4 671 65.7
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.5e-229 800.4 988 45.5
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.6e-215 753.8 573 68.4
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.9e-212 743.0 574 68.1
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 9.0e-206 721.5 973 47.2
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 8.4e-204 714.9 705 52.9
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.7e-202 709.9 563 62.7
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 6.1e-194 682.2 635 59.8
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 5.1e-193 679.1 596 59.4
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.7e-184 649.0 541 63.8
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 6.7e-177 625.5 462 72.1
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 5.3e-166 589.3 567 54.7
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 8.8e-153 545.4 589 50.1
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 3.7e-143 513.5 553 54.4
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 1.2e-136 491.9 1047 33.3
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 9.8e-136 488.8 1025 31.1
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 8.9e-121 439.1 1026 30.1
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 5.8e-120 436.4 324 67.6
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 3.6e-114 417.2 371 57.7
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 9.3e-102 375.9 545 43.3
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.0e-100 372.5 357 57.7
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.8e-100 371.7 276 69.9
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.1e-100 370.2 533 43.5
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 2.5e-99 367.9 382 56.3
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.8e-98 364.4 406 48.5
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 4.0e-97 360.5 273 69.6
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.3e-92 345.5 253 69.2
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.8e-92 345.1 265 65.3
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 3.3e-91 340.9 258 68.2
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 1.4e-86 325.5 277 63.9
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 3.2e-86 324.3 542 41.1
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 7.2e-78 296.6 226 63.7
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.8e-73 282.0 299 55.9
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 3.2e-70 271.2 244 57.0
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.1e-69 268.5 408 44.1
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 2.3e-68 265.0 189 72.5
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.7e-66 258.8 425 42.1
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.8e-65 255.4 586 32.6
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 5.0e-63 247.3 222 55.4
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.9e-62 245.4 242 59.1
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.4e-60 239.2 401 42.4
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 3.7e-58 231.1 389 41.9
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.3e-55 222.6 225 56.9
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 6.5e-55 220.3 262 52.3
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.2e-51 209.5 316 40.8
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.0e-49 200.3 163 68.1
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 2.9e-47 194.9 154 69.5
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 4.7e-45 187.6 135 68.1
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 4.1e-41 174.5 202 51.0
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 4.2e-38 164.5 208 47.6
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.6e-37 162.5 163 54.6
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 4.4e-35 154.5 124 61.3
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 9.8e-35 153.3 103 71.8
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 1.4e-33 149.4 92 75.0
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 1.3e-31 142.9 131 60.3
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 5.0e-31 141.0 361 33.8
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.6e-30 137.5 174 48.9
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.6e-24 119.4 74 75.7
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.6e-24 119.4 74 75.7
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 2.3e-23 115.5 172 43.0
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 8.6e-23 113.6 81 64.2
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.1e-22 113.2 121 51.2
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 1.1e-22 113.2 151 45.7
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 4.4e-19 101.3 165 38.2
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 6.4e-18 97.4 72 65.3
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 5.4e-17 94.4 108 51.9
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 6.6e-07 60.8 53 56.6
Actinidia23183 Actinidia chinensis HOM05D003801 ORTHO05D057972 7.3e-06 57.4 54 55.6


User provided reference genes

Program Settings