Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.7e-55 219.2 117 100.0
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.1e-54 216.5 117 98.3
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.7e-47 192.6 117 85.5
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 8.6e-39 163.7 117 73.5
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.0e-32 142.5 117 70.1
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.3e-31 139.8 118 67.8
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.3e-31 139.8 117 69.2
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 1.3e-31 139.8 120 67.5
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 2.3e-31 139.0 118 66.9
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 5.0e-31 137.9 122 67.2
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.1e-30 136.7 117 65.0
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.5e-30 136.3 117 64.1
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.9e-30 136.0 120 65.0
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 2.5e-30 135.6 118 65.3
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 3.3e-30 135.2 117 65.0
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.3e-30 135.2 121 66.1
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 4.3e-30 134.8 117 65.8
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 4.3e-30 134.8 118 66.1
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 7.3e-30 134.0 117 65.0
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 9.5e-30 133.7 118 66.1
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 3.6e-29 131.7 117 64.1
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 4.7e-29 131.3 115 65.2
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 6.1e-29 131.0 117 64.1
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 8.0e-29 130.6 122 63.9
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 8.0e-29 130.6 119 64.7
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.8e-28 129.4 118 61.9
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.8e-28 129.4 118 61.9
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.8e-28 129.4 117 65.8
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.8e-28 129.4 117 65.8
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.8e-28 129.4 121 62.8
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.3e-28 129.0 117 61.5
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.0e-28 128.6 117 65.8
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.0e-28 128.3 118 66.9
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 5.2e-28 127.9 119 63.9
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 8.9e-28 127.1 117 62.4
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 2.0e-27 125.9 118 61.0
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 3.4e-27 125.2 117 62.4
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 3.4e-27 125.2 120 58.3
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 4.4e-27 124.8 129 61.2
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 4.4e-27 124.8 118 63.6
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 5.8e-27 124.4 120 60.8
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 5.8e-27 124.4 117 61.5
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 7.5e-27 124.0 122 64.8
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.3e-26 123.2 118 65.3
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.2e-26 122.5 118 61.9
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 2.2e-26 122.5 115 63.5
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.9e-26 122.1 122 62.3
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.9e-26 122.1 119 62.2
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 3.7e-26 121.7 117 63.2
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.9e-26 121.3 122 62.3
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 4.9e-26 121.3 122 62.3
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.9e-26 121.3 117 59.8
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 6.4e-26 120.9 121 61.2
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 8.3e-26 120.6 122 64.8
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 8.3e-26 120.6 121 61.2
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 8.3e-26 120.6 121 61.2
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.1e-25 120.2 117 58.1
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.4e-25 119.8 116 60.3
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 1.4e-25 119.8 119 58.8
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.4e-25 119.8 117 62.4
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 1.4e-25 119.8 115 60.9
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 1.9e-25 119.4 118 62.7
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 2.4e-25 119.0 119 63.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 2.4e-25 119.0 119 63.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 2.4e-25 119.0 119 63.0
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.2e-25 118.6 121 60.3
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 3.2e-25 118.6 119 63.0
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 5.4e-25 117.9 113 60.2
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 5.4e-25 117.9 119 58.0
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 9.2e-25 117.1 118 60.2
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 9.2e-25 117.1 121 58.7
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 1.2e-24 116.7 118 61.0
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.2e-24 116.7 122 61.5
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 1.2e-24 116.7 120 61.7
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.2e-24 116.7 116 62.9
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 1.2e-24 116.7 119 63.0
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.2e-24 116.7 116 62.9
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.6e-24 116.3 113 60.2
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.6e-24 116.3 119 62.2
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.7e-24 115.5 115 62.6
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 3.5e-24 115.2 120 61.7
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.5e-24 115.2 113 59.3
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 4.6e-24 114.8 117 59.8
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 7.8e-24 114.0 121 61.2
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 7.8e-24 114.0 121 61.2
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 7.8e-24 114.0 121 61.2
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 7.8e-24 114.0 122 62.3
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.0e-23 113.6 114 59.6
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 1.7e-23 112.8 122 61.5
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 1.7e-23 112.8 122 61.5
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.7e-23 112.8 103 63.1
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.7e-23 112.8 122 61.5
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 2.3e-23 112.5 116 57.8
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 3.0e-23 112.1 116 56.9
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 3.9e-23 111.7 120 56.7
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 6.6e-23 110.9 122 57.4
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 8.6e-23 110.5 122 62.3
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 8.6e-23 110.5 119 54.6
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 8.6e-23 110.5 119 55.5
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.1e-22 110.2 118 59.3
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 1.5e-22 109.8 122 61.5
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 3.3e-22 108.6 120 60.0
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 4.3e-22 108.2 120 59.2
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 5.6e-22 107.8 114 56.1
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 9.5e-22 107.1 124 52.4
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.2e-21 106.7 118 55.1
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 2.1e-21 105.9 125 56.0
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.4e-20 103.2 117 52.1
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.3e-20 102.4 114 55.3
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.1e-20 102.1 111 58.6
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 6.8e-20 100.9 121 57.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.4e-19 98.6 114 56.1
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 4.4e-19 98.2 109 59.6
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 7.5e-19 97.4 119 54.6
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 1.7e-18 96.3 153 43.8
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 2.4e-17 92.4 124 50.8
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.2e-16 90.1 124 49.2
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.6e-16 88.2 120 48.3
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 4.6e-16 88.2 117 53.8
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.0e-16 87.8 117 50.4
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.0e-15 87.0 117 50.4
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.9e-15 85.1 114 48.2
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 6.6e-15 84.3 105 51.4
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 7.3e-14 80.9 105 50.5
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 8.1e-13 77.4 122 45.9
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 1.4e-12 76.6 70 64.3
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 2.3e-12 75.9 86 53.5
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 3.1e-12 75.5 87 48.3
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 3.1e-12 75.5 87 49.4
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.2e-12 74.7 70 61.4
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.2e-12 74.7 70 61.4
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 4.4e-11 71.6 47 78.7
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.8e-11 71.2 71 57.7
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 9.9e-11 70.5 112 41.1
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 3.7e-10 68.6 85 56.5
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.4e-10 67.8 83 54.2
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 3.2e-09 65.5 131 41.2
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 4.1e-09 65.1 72 55.6
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 2.1e-08 62.8 83 49.4
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 2.7e-08 62.4 101 47.5
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 3.5e-08 62.0 197 33.5
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 1.9e-06 56.2 36 80.6
HPP92_003218 Vanilla planifolia HOM05D004934 ORTHO05D005924 2.5e-06 55.8 34 82.4
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 3.3e-06 55.5 34 79.4
ECA238G3836 Erigeron canadensis HOM05D000407 ORTHO05D001717 7.3e-06 54.3 46 56.5


User provided reference genes

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