Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036180 Chenopodium quinoa HOM05D003488 ORTHO05D004214 1.8e-119 432.6 218 100.0
AUR62009763 Chenopodium quinoa HOM05D003488 ORTHO05D004214 1.1e-103 380.2 246 83.7
Dinv29477 Davidia involucrata HOM05D003488 ORTHO05D004214 3.3e-92 342.0 248 73.4
Sc12g0004500 Simmondsia chinensis HOM05D003488 ORTHO05D004214 3.3e-92 342.0 246 74.0
Cpa.g.sc1448.1 Carica papaya HOM05D003488 ORTHO05D004214 1.8e-90 336.3 246 72.4
Ciclev10028521m.g Citrus clementina HOM05D003488 ORTHO05D004214 8.9e-90 334.0 246 70.7
COL.COLO4_19885 Corchorus olitorius HOM05D003488 ORTHO05D004214 2.0e-89 332.8 246 71.5
Manes.11G161600 Manihot esculenta HOM05D003488 ORTHO05D004214 7.5e-89 330.9 246 70.7
Peaxi162Scf00003g00057 Petunia axillaris HOM05D003488 ORTHO05D004214 9.8e-89 330.5 248 69.4
Lj1P237T11 Lonicera japonica HOM05D003488 ORTHO05D004214 4.9e-88 328.2 248 71.4
Actinidia35463 Actinidia chinensis HOM05D003488 ORTHO05D004214 1.4e-87 326.6 248 70.6
Potri.004G203300 Populus trichocarpa HOM05D003488 ORTHO05D004214 1.9e-87 326.2 248 69.4
Potri.009G164200 Populus trichocarpa HOM05D003488 ORTHO05D004214 1.9e-87 326.2 248 69.8
Sabra04G0137300 Salix brachista HOM05D003488 ORTHO05D004214 3.2e-87 325.5 248 69.4
Sopen11g027050 Solanum pennellii HOM05D003488 ORTHO05D004214 3.2e-87 325.5 248 67.7
Atru.chr3.3255 Acer truncatum HOM05D003488 ORTHO05D004214 4.1e-87 325.1 246 68.3
Rhsim01G0205200 Rhododendron simsii HOM05D003488 ORTHO05D004214 7.1e-87 324.3 248 69.8
CSS0019661 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 9.2e-87 323.9 246 71.1
Nitab4.5_0000755g0230 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.2e-86 323.6 248 68.5
QL01p012332 Quercus lobata HOM05D003488 ORTHO05D004214 2.7e-86 322.4 246 69.9
THA.LOC104800533 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 3.5e-86 322.0 248 67.3
Thecc.09G284200 Theobroma cacao HOM05D003488 ORTHO05D004214 3.5e-86 322.0 246 69.9
CiPaw.14G100300 Carya illinoinensis HOM05D003488 ORTHO05D004214 6.0e-86 321.2 248 68.5
Gohir.D07G113900 Gossypium hirsutum HOM05D003488 ORTHO05D004214 7.8e-86 320.9 246 70.3
Gorai.001G122200 Gossypium raimondii HOM05D003488 ORTHO05D004214 7.8e-86 320.9 246 70.3
Ah.15g095780 Amaranthus hybridus HOM05D003488 ORTHO05D004214 1.7e-85 319.7 245 69.4
Gohir.A07G110300 Gossypium hirsutum HOM05D003488 ORTHO05D004214 2.3e-85 319.3 246 69.9
Nitab4.5_0013628g0020 Nicotiana tabacum HOM05D003488 ORTHO05D004214 2.3e-85 319.3 248 67.3
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 3.0e-85 318.9 246 68.3
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 3.0e-85 318.9 246 68.3
TPR.G17200 Trifolium pratense HOM05D003488 ORTHO05D004214 8.6e-85 317.4 246 67.9
Duzib168G1363 Durio zibethinus HOM05D003488 ORTHO05D004214 1.5e-84 316.6 246 68.3
Lsat_1_v5_gn_6_38721 Lactuca sativa HOM05D003488 ORTHO05D004214 1.9e-84 316.2 246 67.9
Nn6g34912 Nelumbo nucifera HOM05D003488 ORTHO05D004214 1.9e-84 316.2 247 68.0
GSVIVG01036133001 Vitis vinifera HOM05D003488 ORTHO05D004214 1.9e-84 316.2 246 67.5
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 2.5e-84 315.8 246 67.5
Glyma.11G183600 Glycine max HOM05D003488 ORTHO05D004214 4.3e-84 315.1 246 67.1
Glyma.12G088900 Glycine max HOM05D003488 ORTHO05D004214 1.2e-83 313.5 248 66.1
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 1.6e-83 313.2 246 68.7
TWI31G0838 Tripterygium wilfordii HOM05D003488 ORTHO05D004214 2.1e-83 312.8 246 67.1
VMungo1127G1058 Vigna mungo HOM05D003488 ORTHO05D004214 2.1e-83 312.8 246 66.3
TAR633G2222 Trochodendron aralioides HOM05D003488 ORTHO05D004214 3.6e-83 312.0 246 68.3
Gohir.D09G095200 Gossypium hirsutum HOM05D003488 ORTHO05D004214 6.2e-83 311.2 246 67.5
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 6.2e-83 311.2 246 67.9
Lalb_Chr01g0004851 Lupinus albus HOM05D003488 ORTHO05D004214 6.2e-83 311.2 243 67.9
Manes.04G004000 Manihot esculenta HOM05D003488 ORTHO05D004214 8.1e-83 310.8 246 66.7
Prupe.6G129400 Prunus persica HOM05D003488 ORTHO05D004214 8.1e-83 310.8 246 66.7
Aqoxy4G02784 Aquilegia oxysepala HOM05D003488 ORTHO05D004214 1.4e-82 310.1 244 67.6
Gorai.006G111900 Gossypium raimondii HOM05D003488 ORTHO05D004214 1.8e-82 309.7 246 67.1
MBI17_g08366_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.8e-82 309.7 244 69.3
Medtr4g053260 Medicago truncatula HOM05D003488 ORTHO05D004214 1.8e-82 309.7 246 66.3
Phvul.011G093800 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 1.8e-82 309.7 246 66.7
Phvul.011G094000 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 4.0e-82 308.5 246 66.3
DCAR_013382 Daucus carota HOM05D003488 ORTHO05D004214 6.8e-82 307.8 244 66.4
Carub.0002s1346 Capsella rubella HOM05D003488 ORTHO05D004214 3.4e-81 305.4 246 65.0
CARHR059640 Cardamine hirsuta HOM05D003488 ORTHO05D004214 3.4e-81 305.4 246 65.4
Lsat_1_v5_gn_8_76881 Lactuca sativa HOM05D003488 ORTHO05D004214 3.4e-81 305.4 244 66.4
Hund18755 Selenicereus undatus HOM05D003488 ORTHO05D004214 3.4e-81 305.4 232 70.3
Dinv31679 Davidia involucrata HOM05D003488 ORTHO05D004214 7.6e-81 304.3 244 66.8
PSO339G0354 Papaver somniferum HOM05D003488 ORTHO05D004214 7.6e-81 304.3 244 67.2
Thhalv10018615m.g Eutrema salsugineum HOM05D003488 ORTHO05D004214 9.9e-81 303.9 246 65.0
AL2G25690 Arabidopsis lyrata HOM05D003488 ORTHO05D004214 1.3e-80 303.5 246 65.0
AT1G67190 Arabidopsis thaliana HOM05D003488 ORTHO05D004214 1.3e-80 303.5 246 65.0
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 1.3e-80 303.5 244 65.2
Psat0s2993g0200 Pisum sativum HOM05D003488 ORTHO05D004214 1.3e-80 303.5 246 65.4
Dinv21216 Davidia involucrata HOM05D003488 ORTHO05D004214 1.7e-80 303.1 244 66.0
FAN05G0207 Fragaria x ananassa HOM05D003488 ORTHO05D004214 1.7e-80 303.1 246 63.8
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 2.9e-80 302.4 244 64.8
PSO384G1288 Papaver somniferum HOM05D003488 ORTHO05D004214 2.9e-80 302.4 246 65.9
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 1.1e-79 300.4 246 65.0
Sp5g22120 Schrenkiella parvula HOM05D003488 ORTHO05D004214 1.9e-79 299.7 246 63.8
FAN09G1414 Fragaria x ananassa HOM05D003488 ORTHO05D004214 4.1e-79 298.5 244 63.9
Hma1.2p1_0084F.1_g043700 Hydrangea macrophylla HOM05D003488 ORTHO05D004214 4.1e-79 298.5 244 65.2
BcaB03g15209 Brassica carinata HOM05D003488 ORTHO05D004214 5.4e-79 298.1 246 63.8
BcaC08g46148 Brassica carinata HOM05D003488 ORTHO05D004214 5.4e-79 298.1 246 63.8
A07p33820 Brassica napus HOM05D003488 ORTHO05D004214 5.4e-79 298.1 246 63.8
C06p43110 Brassica napus HOM05D003488 ORTHO05D004214 5.4e-79 298.1 246 63.8
BolC6t39128H Brassica oleracea HOM05D003488 ORTHO05D004214 5.4e-79 298.1 246 63.8
BraA07t31008Z Brassica rapa HOM05D003488 ORTHO05D004214 5.4e-79 298.1 246 63.8
SalBow3G3938 Salvia bowleyana HOM05D003488 ORTHO05D004214 5.4e-79 298.1 244 63.1
CSS0032778 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 1.6e-78 296.6 244 64.3
MSTRG.26643 Avicennia marina HOM05D003488 ORTHO05D004214 2.1e-78 296.2 244 63.1
ECA233G3236 Erigeron canadensis HOM05D003488 ORTHO05D004214 2.1e-78 296.2 246 65.0
GSVIVG01033833001 Vitis vinifera HOM05D003488 ORTHO05D004214 2.1e-78 296.2 244 63.5
Cfa016600 Carpinus fangiana HOM05D003488 ORTHO05D004214 3.5e-78 295.4 246 64.2
Migut.J01046 Erythranthe guttata HOM05D003488 ORTHO05D004214 3.5e-78 295.4 244 63.1
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 6.0e-78 294.7 244 63.5
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 1.0e-77 293.9 244 63.5
Haze_19602 Corylus avellana HOM05D003488 ORTHO05D004214 3.0e-77 292.4 244 64.3
Manes.09G056000 Manihot esculenta HOM05D003488 ORTHO05D004214 1.5e-76 290.0 244 63.5
Actinidia31274 Actinidia chinensis HOM05D003488 ORTHO05D004214 1.9e-76 289.7 244 63.9
PGR004G0231 Punica granatum HOM05D003488 ORTHO05D004214 4.3e-76 288.5 244 62.3
Oeu009221.1 Olea europaea HOM05D003488 ORTHO05D004214 9.6e-76 287.3 244 61.9
SGA_v2.0_scaffold13G06728 Striga asiatica HOM05D003488 ORTHO05D004214 1.6e-75 286.6 239 62.3
SGA_v2.0_scaffold75G24751 Striga asiatica HOM05D003488 ORTHO05D004214 2.1e-75 286.2 244 61.1
Cc06_g05690 Coffea canephora HOM05D003488 ORTHO05D004214 3.6e-75 285.4 244 61.9
MSTRG.5840 Avicennia marina HOM05D003488 ORTHO05D004214 2.4e-74 282.7 244 59.4
Rhsim03G0075900 Rhododendron simsii HOM05D003488 ORTHO05D004214 6.9e-74 281.2 243 60.5
Sc20g0006250 Simmondsia chinensis HOM05D003488 ORTHO05D004214 8.9e-74 280.8 246 57.3
EL10Ac7g16924 Beta vulgaris HOM05D003488 ORTHO05D004214 2.6e-73 279.3 245 58.8
CDE06G0950 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 2.6e-73 279.3 244 60.7
HanXRQChr02g0044451 Helianthus annuus HOM05D003488 ORTHO05D004214 2.6e-73 279.3 244 61.5
AUR62021589 Chenopodium quinoa HOM05D003488 ORTHO05D004214 5.8e-73 278.1 245 59.6
ATR0776G025 Amborella trichopoda HOM05D003488 ORTHO05D004214 3.8e-72 275.4 244 62.7
AUR62028536 Chenopodium quinoa HOM05D003488 ORTHO05D004214 4.9e-72 275.0 246 57.7
CANSAT54G1372 Cannabis sativa HOM05D003488 ORTHO05D004214 1.1e-71 273.9 250 59.2
AUR62006173 Chenopodium quinoa HOM05D003488 ORTHO05D004214 1.9e-71 273.1 246 57.7
arahy.Tifrunner.gnm1.ann1.D6PK9F Arachis hypogaea HOM05D003488 ORTHO05D004214 4.6e-70 268.5 243 61.7
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 4.6e-70 268.5 246 58.9
Nitab4.5_0001725g0160 Nicotiana tabacum HOM05D003488 ORTHO05D004214 3.0e-69 265.8 244 58.6
CAN.G397.11 Capsicum annuum HOM05D003488 ORTHO05D004214 3.9e-69 265.4 246 57.7
Peaxi162Scf00290g00084 Petunia axillaris HOM05D003488 ORTHO05D004214 5.1e-69 265.0 244 58.6
HPP92_003226 Vanilla planifolia HOM05D003488 ORTHO05D004214 5.1e-69 265.0 244 57.0
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 8.7e-69 264.2 243 56.0
ECA236G1444 Erigeron canadensis HOM05D003488 ORTHO05D004214 1.9e-68 263.1 244 58.6
Nitab4.5_0005483g0030 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.9e-68 263.1 244 58.2
Sopen09g004200 Solanum pennellii HOM05D003488 ORTHO05D004214 3.3e-68 262.3 243 58.0
PGSC0003DMG403002701 Solanum tuberosum HOM05D003488 ORTHO05D004214 7.3e-68 261.2 243 57.6
CAN.G1039.14 Capsicum annuum HOM05D003488 ORTHO05D004214 1.3e-67 260.4 244 57.4
Phvul.001G189500 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 1.3e-67 260.4 244 57.0
Solyc10g083480.2 Solanum lycopersicum HOM05D003488 ORTHO05D004214 1.3e-67 260.4 244 57.4
VMungo1383G0237 Vigna mungo HOM05D003488 ORTHO05D004214 1.3e-67 260.4 246 56.1
Ah.15g090910 Amaranthus hybridus HOM05D003488 ORTHO05D004214 1.6e-67 260.0 244 54.5
Eucgr.A01498 Eucalyptus grandis HOM05D003488 ORTHO05D004214 3.6e-67 258.8 248 56.5
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 8.1e-67 257.7 244 57.8
TPR.G21934 Trifolium pratense HOM05D003488 ORTHO05D004214 2.4e-66 256.1 243 57.2
Nitab4.5_0000963g0070 Nicotiana tabacum HOM05D003488 ORTHO05D004214 3.1e-66 255.8 244 57.0
SEGI_24231 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 9.0e-66 254.2 244 55.7
CiPaw.13G136000 Carya illinoinensis HOM05D003488 ORTHO05D004214 2.2e-64 249.6 246 57.3
RcHm_v2.0_Chr3g0473131 Rosa chinensis HOM05D003488 ORTHO05D004214 2.9e-64 249.2 244 57.0
SalBow5G1330 Salvia bowleyana HOM05D003488 ORTHO05D004214 3.8e-64 248.8 244 56.1
PGR102G1638 Punica granatum HOM05D003488 ORTHO05D004214 8.4e-64 247.7 243 52.7
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 1.9e-63 246.5 246 52.8
CDE08G1419 Ceratophyllum demersum HOM05D003488 ORTHO05D004214 7.1e-63 244.6 215 59.5
Sopen10g032950 Solanum pennellii HOM05D003488 ORTHO05D004214 1.6e-62 243.4 196 62.8
PGSC0003DMG400028258 Solanum tuberosum HOM05D003488 ORTHO05D004214 1.6e-62 243.4 196 62.8
Psat4g110920 Pisum sativum HOM05D003488 ORTHO05D004214 1.8e-61 240.0 244 53.3
Os01g0859600 Oryza sativa ssp. japonica HOM05D003488 ORTHO05D004214 2.3e-61 239.6 244 54.9
Psat3g033640 Pisum sativum HOM05D003488 ORTHO05D004214 3.9e-61 238.8 245 51.4
Psat6g013800 Pisum sativum HOM05D003488 ORTHO05D004214 3.9e-61 238.8 244 54.1
Nitab4.5_0000132g0010 Nicotiana tabacum HOM05D003488 ORTHO05D004214 5.1e-61 238.4 196 62.2
Peaxi162Scf00163g00052 Petunia axillaris HOM05D003488 ORTHO05D004214 5.1e-61 238.4 205 62.9
Solyc09g009470.1 Solanum lycopersicum HOM05D003488 ORTHO05D004214 5.1e-61 238.4 148 76.4
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 8.7e-61 237.7 248 54.8
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 5.6e-60 235.0 244 54.9
TPR.G19554 Trifolium pratense HOM05D003488 ORTHO05D004214 2.8e-59 232.6 213 54.9
TPR.G11390 Trifolium pratense HOM05D003488 ORTHO05D004214 5.3e-58 228.4 246 48.8
CiPaw.13G136100 Carya illinoinensis HOM05D003488 ORTHO05D004214 9.0e-58 227.6 247 54.7
Eucgr.B03854 Eucalyptus grandis HOM05D003488 ORTHO05D004214 5.8e-57 224.9 247 53.0
SEGI_39785 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 2.2e-56 223.0 246 50.4
Sed0023871 Sechium edule HOM05D003488 ORTHO05D004214 3.8e-56 222.2 241 52.7
Ca_08999_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 2.4e-55 219.5 246 48.8
ClCG04G010010 Citrullus lanatus HOM05D003488 ORTHO05D004214 5.5e-55 218.4 146 70.5
Medtr1g060040 Medicago truncatula HOM05D003488 ORTHO05D004214 5.5e-55 218.4 244 51.6
MELO3C024542.2 Cucumis melo HOM05D003488 ORTHO05D004214 9.3e-55 217.6 148 69.6
CsaV3_6G040650 Cucumis sativus L. HOM05D003488 ORTHO05D004214 2.1e-54 216.5 148 69.6
Pp3c25_4500 Physcomitrium patens HOM05D003488 ORTHO05D004214 2.5e-52 209.5 244 49.2
CiPaw.13G136300 Carya illinoinensis HOM05D003488 ORTHO05D004214 8.1e-51 204.5 215 54.4
Mapoly0037s0051 Marchantia polymorpha HOM05D003488 ORTHO05D004214 6.9e-50 201.4 244 46.3
Nitab4.5_0000202g0240 Nicotiana tabacum HOM05D003488 ORTHO05D004214 1.2e-49 200.7 245 49.0
Nitab4.5_0000216g0240 Nicotiana tabacum HOM05D003488 ORTHO05D004214 2.5e-47 193.0 219 49.8
THA.LOC104815726 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 2.7e-46 189.5 246 43.5
Gohir.A09G095500 Gossypium hirsutum HOM05D003488 ORTHO05D004214 2.3e-45 186.4 165 61.8
Actinidia07930 Actinidia chinensis HOM05D003488 ORTHO05D004214 1.6e-43 180.3 214 49.5
Lj3A997T49 Lonicera japonica HOM05D003488 ORTHO05D004214 1.6e-43 180.3 163 60.1
CANSAT80G2309 Cannabis sativa HOM05D003488 ORTHO05D004214 1.7e-40 170.2 249 40.2
FAN14G3815 Fragaria x ananassa HOM05D003488 ORTHO05D004214 2.2e-40 169.9 163 55.2
CANSAT80G1046 Cannabis sativa HOM05D003488 ORTHO05D004214 4.2e-39 165.6 248 38.3
Oeu056924.1 Olea europaea HOM05D003488 ORTHO05D004214 7.2e-39 164.9 170 54.7
CAN.G1358.15 Capsicum annuum HOM05D003488 ORTHO05D004214 3.6e-38 162.5 178 53.4
Nn2g14149 Nelumbo nucifera HOM05D003488 ORTHO05D004214 4.6e-38 162.2 163 55.8
AagrBONN_evm.TU.Sc2ySwM_368.174 Anthoceros agrestis HOM05D003488 ORTHO05D004214 3.3e-36 156.0 196 45.9
Peaxi162Scf00094g00163 Petunia axillaris HOM05D003488 ORTHO05D004214 2.2e-35 153.3 154 55.2
PGR102G1861 Punica granatum HOM05D003488 ORTHO05D004214 3.1e-34 149.4 208 43.8
Psat0s2993g0360 Pisum sativum HOM05D003488 ORTHO05D004214 4.1e-34 149.1 94 79.8
SEGI_25159 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 2.7e-30 136.3 163 47.2
HanXRQChr05g0133181 Helianthus annuus HOM05D003488 ORTHO05D004214 3.9e-29 132.5 83 79.5
THA.LOC104824558 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 5.1e-29 132.1 224 39.7
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 5.0e-24 115.5 242 33.1
MBI05_g08793_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 4.2e-23 112.5 242 32.6
Lalb_Chr19g0136481 Lupinus albus HOM05D003488 ORTHO05D004214 1.4e-21 107.5 124 47.6
Lsat_1_v5_gn_9_103040 Lactuca sativa HOM05D003488 ORTHO05D004214 2.2e-16 90.1 75 64.0
PGR102G2183 Punica granatum HOM05D003488 ORTHO05D004214 2.0e-12 77.0 173 32.9
HanXRQChr05g0133171 Helianthus annuus HOM05D003488 ORTHO05D004214 6.3e-11 72.0 54 63.0


User provided reference genes

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