Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.5e-136 489.6 266 100.0
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 3.7e-106 388.7 266 83.8
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 7.3e-94 347.8 269 76.2
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 8.1e-69 264.6 251 61.8
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 8.1e-69 264.6 247 63.6
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 4.0e-68 262.3 278 59.7
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.7e-66 256.9 280 55.7
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 8.4e-66 254.6 280 56.8
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 2.4e-65 253.1 283 56.2
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 9.3e-65 251.1 286 57.7
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 3.5e-64 249.2 236 63.6
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 6.0e-64 248.4 276 54.7
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.7e-63 246.9 256 60.5
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 2.3e-63 246.5 284 56.0
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 3.0e-63 246.1 275 56.4
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 3.9e-63 245.7 271 59.0
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 1.9e-62 243.4 283 58.0
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.9e-62 243.4 263 58.2
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.9e-62 243.4 275 56.4
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 5.6e-62 241.9 257 57.6
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.6e-61 240.4 286 55.6
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.6e-61 240.4 263 58.2
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 3.6e-61 239.2 289 52.2
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.8e-61 238.8 287 55.7
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.8e-61 238.8 288 55.2
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 6.2e-61 238.4 268 55.2
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 6.2e-61 238.4 287 56.8
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 8.1e-61 238.0 288 56.6
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 8.1e-61 238.0 285 55.1
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.4e-60 237.3 287 56.8
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.8e-60 236.9 287 56.8
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 1.8e-60 236.9 273 56.8
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 2.4e-60 236.5 267 57.3
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 3.1e-60 236.1 283 55.8
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 9.0e-60 234.6 266 55.6
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 1.5e-59 233.8 285 55.4
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 1.5e-59 233.8 267 55.4
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 2.6e-59 233.0 264 54.5
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 5.8e-59 231.9 273 55.3
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.3e-58 230.7 260 56.5
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.7e-58 230.3 276 55.1
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.7e-58 230.3 272 52.2
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 2.2e-58 229.9 213 65.3
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 2.2e-58 229.9 206 64.6
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 2.9e-58 229.6 209 65.6
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.9e-58 229.6 284 55.3
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 2.9e-58 229.6 267 55.4
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 3.8e-58 229.2 267 55.1
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 4.9e-58 228.8 285 53.0
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 4.9e-58 228.8 294 52.0
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 6.4e-58 228.4 260 56.2
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 6.4e-58 228.4 262 54.2
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 8.4e-58 228.0 280 56.4
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.4e-57 227.3 259 55.2
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 1.9e-57 226.9 264 54.2
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 3.2e-57 226.1 267 55.8
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 1.2e-56 224.2 271 57.2
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 1.2e-56 224.2 225 60.0
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 2.1e-56 223.4 268 53.0
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 2.7e-56 223.0 239 58.2
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 6.0e-56 221.9 257 55.6
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 7.9e-56 221.5 321 46.7
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.0e-55 221.1 229 58.1
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 1.3e-55 220.7 210 63.3
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.8e-55 220.3 261 55.6
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 2.3e-55 219.9 217 62.2
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 2.3e-55 219.9 217 62.7
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 3.0e-55 219.5 288 50.7
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 5.1e-55 218.8 214 63.1
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 8.7e-55 218.0 273 52.4
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 1.5e-54 217.2 217 60.4
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 2.5e-54 216.5 217 60.4
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 2.5e-54 216.5 217 60.4
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 2.5e-54 216.5 217 60.4
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 4.3e-54 215.7 268 53.7
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 5.6e-54 215.3 216 63.9
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 7.4e-54 214.9 278 52.9
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.1e-52 211.1 248 54.8
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 1.1e-52 211.1 278 52.2
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.1e-52 211.1 275 50.9
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.1e-52 211.1 275 50.9
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 3.1e-52 209.5 261 54.0
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 3.1e-52 209.5 203 61.1
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 3.1e-52 209.5 203 61.1
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 3.4e-51 206.1 259 50.6
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 3.8e-50 202.6 210 60.0
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 4.9e-50 202.2 244 52.0
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 6.4e-50 201.8 213 57.7
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 1.1e-49 201.1 261 51.3
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 2.4e-49 199.9 224 54.0
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.5e-49 198.7 278 50.4
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 3.5e-48 196.1 268 50.4
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 6.0e-48 195.3 261 49.8
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 2.3e-47 193.4 226 56.6
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.9e-47 192.6 277 49.1
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 1.9e-46 190.3 234 53.0
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 2.5e-46 189.9 237 54.0
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.5e-43 180.6 195 55.9
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 1.1e-41 174.5 256 44.9
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 5.5e-41 172.2 265 47.2
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 2.1e-40 170.2 184 59.2
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 1.1e-38 164.5 260 45.4
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 7.4e-38 161.8 250 46.8
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 1.2e-35 154.5 152 61.8
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 1.6e-32 144.1 263 40.3
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 3.6e-32 142.9 242 40.5
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 3.0e-31 139.8 250 40.8
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 4.3e-30 136.0 129 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 1.3e-29 134.4 172 47.7
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 6.3e-29 132.1 216 45.4
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 3.1e-28 129.8 210 44.3
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 6.9e-28 128.6 134 58.2
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 6.9e-28 128.6 134 58.2
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 2.0e-27 127.1 128 60.2
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 2.6e-27 126.7 122 59.0
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 8.5e-26 121.7 164 51.2
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 2.5e-25 120.2 153 52.3
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 9.4e-25 118.2 102 66.7
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 1.4e-23 114.4 125 54.4
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.8e-23 114.0 189 42.9
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 2.6e-22 110.2 224 39.3
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 4.1e-20 102.8 225 38.7
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.2e-19 101.3 71 78.9
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 2.2e-18 97.1 183 41.0
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 3.2e-17 93.2 138 44.9
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 9.4e-17 91.7 183 41.5
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 2.1e-16 90.5 49 91.8
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.0e-15 88.2 73 72.6
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 3.0e-15 86.7 194 33.0
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 5.7e-14 82.4 151 35.1
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 9.7e-14 81.6 118 48.3
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 2.7e-08 63.5 60 61.7
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 3.0e-07 60.1 42 73.8
Lalb_Chr03g0030791 Lupinus albus HOM05D005433 ORTHO05D006675 4.0e-07 59.7 89 47.2
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 7.5e-06 55.5 44 63.6


User provided reference genes

Program Settings