Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 0.0e+00 1136.3 700 100.0
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.5e-162 577.4 485 81.2
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 4.2e-141 506.1 755 56.7
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 9.1e-128 461.8 726 48.6
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.6e-95 354.8 780 42.9
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 6.6e-94 349.4 741 44.4
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.3e-91 340.9 747 39.1
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 5.8e-90 336.3 753 38.6
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 1.7e-89 334.7 756 42.1
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.1e-88 332.0 750 40.4
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 7.0e-88 329.3 764 37.7
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.2e-87 328.6 762 36.7
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.3e-86 325.1 751 39.1
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.5e-82 311.6 761 44.4
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 5.8e-82 309.7 770 38.4
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 7.5e-82 309.3 766 39.9
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.7e-81 308.1 788 36.4
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 1.7e-81 308.1 789 38.0
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.9e-81 306.6 777 37.1
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.9e-81 306.6 767 38.3
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.4e-81 306.2 773 39.7
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 1.1e-80 305.4 761 37.1
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.1e-80 305.4 790 38.0
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 7.1e-80 302.8 795 38.4
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 1.6e-79 301.6 784 35.8
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 3.5e-79 300.4 822 36.4
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 6.0e-79 299.7 769 37.3
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 2.3e-78 297.7 772 37.3
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.6e-78 296.2 784 39.8
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 8.6e-78 295.8 754 43.2
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 3.3e-77 293.9 785 36.8
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.3e-77 293.5 788 38.1
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 2.1e-76 291.2 723 44.3
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 4.7e-76 290.0 777 35.4
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 6.2e-76 289.7 768 36.3
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.1e-75 288.9 760 39.9
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.1e-75 288.9 803 35.4
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.8e-75 286.2 745 38.5
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.2e-74 285.4 754 35.0
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 4.4e-74 283.5 769 38.6
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 9.9e-74 282.3 765 40.3
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 1.3e-73 282.0 750 37.3
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.7e-73 281.6 751 41.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.2e-73 281.2 784 34.4
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.8e-73 280.4 751 40.2
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 7.8e-71 272.7 753 44.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 1.7e-70 271.6 731 35.8
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 3.9e-70 270.4 742 39.2
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 7.3e-69 266.2 747 36.0
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 7.3e-69 266.2 766 38.3
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.6e-68 265.0 745 40.1
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.8e-68 264.2 811 34.3
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 3.6e-68 263.8 870 35.9
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 4.7e-68 263.5 759 36.6
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.1e-67 262.3 794 33.5
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.4e-67 261.9 785 38.3
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.8e-67 261.5 757 38.4
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.2e-66 258.8 775 37.5
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.5e-66 258.5 704 41.9
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.5e-66 258.5 736 34.5
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 4.4e-66 256.9 764 34.8
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 5.8e-66 256.5 768 33.7
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.3e-65 255.4 732 35.1
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.2e-65 254.6 740 34.1
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 2.9e-65 254.2 732 35.1
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 4.2e-64 250.4 835 38.1
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 4.2e-64 250.4 687 35.2
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 9.3e-64 249.2 744 35.6
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 3.5e-63 247.3 756 39.6
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 4.6e-63 246.9 766 37.9
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 7.8e-63 246.1 729 36.8
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.0e-62 245.7 726 41.3
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.9e-62 243.8 729 37.3
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 6.6e-62 243.0 775 37.7
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.3e-61 240.7 757 35.5
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.8e-60 236.9 816 38.7
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 4.8e-60 236.9 752 31.9
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 8.1e-60 236.1 726 37.2
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 8.1e-60 236.1 775 36.0
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.4e-59 235.3 740 36.8
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.0e-58 231.5 749 33.5
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.4e-58 230.7 757 33.9
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 9.9e-58 229.2 701 33.8
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 9.9e-58 229.2 747 32.8
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.3e-57 228.8 733 31.9
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 6.4e-57 226.5 729 35.9
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.1e-56 225.7 724 32.2
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.1e-56 225.7 736 33.3
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.4e-56 224.6 732 36.9
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 2.7e-55 221.1 757 34.2
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 4.6e-55 220.3 731 32.7
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.0e-54 217.6 709 37.7
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.9e-53 214.9 639 38.7
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 7.4e-53 213.0 749 32.6
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.1e-52 211.5 715 36.1
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.1e-52 211.5 602 40.4
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 3.1e-51 207.6 756 32.7
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 4.0e-51 207.2 794 31.6
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 9.0e-51 206.1 737 32.2
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.8e-49 200.7 739 36.4
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 4.9e-49 200.3 636 33.5
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 8.4e-49 199.5 743 33.0
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 8.4e-49 199.5 761 36.4
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 1.1e-48 199.1 721 37.7
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.9e-48 198.4 747 35.6
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 4.2e-48 197.2 730 31.6
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.6e-47 195.3 754 36.3
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 6.7e-46 189.9 730 36.6
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 6.7e-46 189.9 793 32.2
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.5e-45 188.7 773 32.1
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 8.2e-44 183.0 738 29.1
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 2.4e-43 181.4 684 29.5
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 5.3e-43 180.3 676 33.7
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 5.3e-43 180.3 692 29.9
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 6.9e-43 179.9 805 29.9
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 3.4e-42 177.6 802 32.3
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 3.8e-41 174.1 792 41.7
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.5e-37 162.2 727 29.4
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.8e-35 155.2 698 28.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.2e-34 152.5 723 33.2
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.1e-31 141.7 697 31.1
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 2.3e-30 138.3 708 31.9
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.9e-30 137.5 779 32.0
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 2.5e-29 134.8 328 37.5
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 4.3e-29 134.0 716 28.5
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.2e-28 131.7 252 41.7
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.1e-27 127.5 499 38.1
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 6.9e-27 126.7 444 37.2
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 3.4e-26 124.4 269 34.6
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.7e-25 122.1 175 48.6
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 9.4e-24 116.3 166 49.4
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 9.4e-24 116.3 673 26.9
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.1e-23 115.2 214 39.7
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 4.7e-23 114.0 678 27.1
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 6.1e-23 113.6 678 27.3
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.0e-22 112.8 269 39.0
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-22 112.5 651 26.1
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.4e-22 112.5 180 42.8
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 3.9e-22 110.9 550 29.5
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.8e-22 109.8 652 26.5
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.5e-21 109.0 718 28.1
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.5e-21 109.0 718 28.1
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 1.5e-21 109.0 147 47.6
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.6e-21 108.2 771 27.6
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.3e-21 107.8 652 26.8
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 4.4e-21 107.5 210 43.8
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.4e-21 107.5 745 27.1
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.3e-20 105.9 725 29.1
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 2.8e-20 104.8 854 24.2
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 4.8e-20 104.0 226 39.8
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 6.3e-20 103.6 722 27.4
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.1e-19 102.8 701 27.8
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 1.4e-19 102.4 735 27.2
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 2.0e-18 98.6 888 24.2
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 3.4e-18 97.8 180 41.7
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 3.4e-18 97.8 156 49.4
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.0e-17 96.3 309 32.0
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 2.5e-16 91.7 856 23.7
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 5.5e-16 90.5 119 47.9
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.2e-15 89.4 726 26.0
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.0e-14 86.3 686 34.0
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.7e-12 79.0 184 34.8
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.2e-07 62.8 231 26.4
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 6.7e-06 57.0 400 25.5


User provided reference genes

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