Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 0.0e+00 1417.1 724 100.0
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 0.0e+00 1286.2 724 91.6
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 0.0e+00 1104.0 725 78.2
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 3.1e-304 1048.1 725 74.1
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.1e-288 996.5 735 70.5
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.6e-276 956.1 726 68.5
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 8.5e-230 800.8 735 57.0
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.5e-229 800.0 745 56.2
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.0e-223 779.6 725 57.2
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.5e-221 773.5 751 54.5
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 6.1e-220 768.1 755 54.2
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 5.7e-218 761.5 754 55.0
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.7e-217 760.0 748 55.2
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.4e-216 756.9 643 62.1
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 5.4e-216 755.0 771 54.5
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.7e-215 752.7 765 53.9
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-211 740.0 749 53.7
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 8.9e-211 737.6 758 52.5
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.6e-210 736.1 762 52.1
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.2e-209 733.0 753 52.7
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 2.9e-209 732.6 758 52.5
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 3.7e-209 732.3 748 52.9
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 8.3e-209 731.1 752 52.3
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 5.4e-208 728.4 757 52.4
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 2.0e-207 726.5 749 53.9
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 2.7e-207 726.1 725 53.1
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.5e-207 725.7 756 52.2
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.3e-206 723.8 760 51.7
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.1e-205 720.7 749 51.0
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.1e-205 720.7 772 51.8
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.6e-204 716.8 753 51.7
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.1e-204 716.5 745 53.6
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 8.0e-204 714.5 750 51.9
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.8e-203 713.4 747 51.9
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.1e-203 712.6 729 52.7
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.2e-202 710.7 744 52.0
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.5e-202 710.3 740 52.2
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 2.4e-200 703.0 749 52.2
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 3.2e-200 702.6 726 51.1
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.2e-199 700.7 760 51.6
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 1.2e-199 700.7 743 50.5
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.1e-199 699.9 744 51.1
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 2.1e-199 699.9 733 52.3
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.6e-199 698.7 732 51.8
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 7.8e-199 698.0 742 51.5
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.0e-198 697.6 724 53.3
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.3e-198 697.2 747 51.7
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.7e-198 696.8 709 52.9
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.7e-198 696.8 750 51.5
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.3e-198 696.4 742 51.6
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.0e-198 696.0 742 51.3
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 3.3e-197 692.6 750 50.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.3e-197 692.6 739 50.5
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 9.5e-197 691.0 740 51.5
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.7e-196 688.7 753 50.9
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 6.8e-195 684.9 747 52.5
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.0e-194 683.3 755 50.5
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 2.0e-194 683.3 742 51.2
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 2.6e-194 682.9 753 51.1
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 7.6e-194 681.4 749 50.3
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 2.2e-193 679.9 749 50.2
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 7.1e-192 674.9 755 50.1
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 7.8e-191 671.4 751 50.2
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.5e-189 667.2 792 47.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 2.5e-189 666.4 780 48.8
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 5.6e-189 665.2 750 49.7
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 7.3e-189 664.8 773 48.4
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.6e-188 663.7 719 50.3
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.4e-187 659.8 773 47.9
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.2e-186 657.5 704 51.6
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 3.4e-186 656.0 745 48.7
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 7.6e-186 654.8 732 50.5
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.4e-184 649.8 763 49.1
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.7e-182 643.7 772 47.8
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 6.6e-182 641.7 772 47.4
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.1e-181 641.0 771 46.4
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.1e-181 641.0 752 48.3
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 4.3e-181 639.0 772 48.1
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 7.3e-181 638.3 783 48.4
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.0e-179 632.5 748 48.0
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 2.0e-178 630.2 765 46.5
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.3e-177 627.5 773 47.1
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 3.8e-177 625.9 761 47.0
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 6.4e-177 625.2 740 48.1
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 8.4e-177 624.8 767 46.8
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.4e-176 624.0 765 45.8
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.1e-175 620.2 765 46.3
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 2.1e-175 620.2 703 48.6
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.1e-175 620.2 764 45.8
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 2.7e-175 619.8 763 46.7
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 3.5e-175 619.4 726 47.4
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 1.3e-174 617.5 766 45.8
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 9.6e-173 611.3 760 46.3
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 3.6e-172 609.4 757 46.4
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 6.2e-172 608.6 760 46.3
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 6.2e-172 608.6 641 53.5
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.4e-171 606.7 751 46.6
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 5.3e-171 605.5 604 54.0
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.2e-170 604.4 737 46.3
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.6e-170 603.2 757 46.0
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 9.9e-170 601.3 788 45.4
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 4.9e-169 599.0 679 49.8
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 5.4e-168 595.5 670 49.0
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.9e-167 591.7 719 47.1
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 3.9e-166 589.3 801 43.3
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 9.0e-163 578.2 847 42.9
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.9e-160 570.5 725 46.3
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.8e-158 563.9 649 47.6
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.9e-152 543.9 794 41.7
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 2.1e-151 540.4 673 46.4
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.9e-144 517.3 675 43.9
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.0e-142 510.0 706 43.5
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.0e-141 507.3 676 44.7
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.7e-137 494.2 811 38.1
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 5.0e-137 492.7 561 48.5
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.4e-131 473.8 522 48.1
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.5e-128 463.8 719 40.3
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.0e-126 458.4 771 38.3
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.1e-123 446.8 798 37.5
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-121 441.4 786 37.0
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.7e-98 364.0 848 32.1
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 8.6e-89 332.4 538 37.7
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.9e-88 331.3 593 35.8
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.4e-78 298.5 513 36.3
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 7.6e-69 266.2 423 37.8
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.2e-66 258.8 655 29.0
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.9e-48 198.4 224 44.2
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.2e-44 184.9 219 46.1
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.1e-43 182.6 274 39.8
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.2e-43 180.6 128 65.6
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.8e-41 175.3 124 68.5
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 6.7e-41 173.3 108 73.1
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.8e-39 167.9 212 42.9
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 6.5e-36 156.8 98 75.5
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 1.6e-34 152.1 94 73.4
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.9e-33 147.5 95 71.6
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 5.3e-30 137.1 128 54.7
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 4.4e-24 117.5 147 41.5
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 2.0e-16 92.0 95 56.8
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.3e-15 89.4 74 54.1
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 4.1e-14 84.3 242 31.4
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 4.7e-10 70.9 122 36.9
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 4.0e-09 67.8 168 34.5
ATR0721G002 Amborella trichopoda HOM05D001312 ORTHO05D001832 8.8e-09 66.6 197 28.9
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 8.8e-09 66.6 433 24.5
AagrBONN_evm.TU.Sc2ySwM_344.3436 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.7e-07 62.4 51 60.8
MSTRG.17625 Avicennia marina HOM05D001312 ORTHO05D001832 1.7e-07 62.4 245 26.9
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 4.8e-07 60.8 192 30.7
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 6.3e-07 60.5 70 41.4
CDE02G1918 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 8.2e-07 60.1 218 28.9
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 1.1e-06 59.7 70 41.4
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 1.4e-06 59.3 43 62.8
SEGI_08770 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.8e-06 58.9 166 30.7
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 3.1e-06 58.2 70 40.0
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 5.3e-06 57.4 70 40.0
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 9.1e-06 56.6 70 38.6
Manes.06G161100 Manihot esculenta HOM05D001312 ORTHO05D001832 9.1e-06 56.6 186 27.4


User provided reference genes

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