Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.6e-132 476.1 244 100.0
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 5.0e-73 278.5 135 99.3
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 1.2e-71 273.9 135 97.8
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 1.8e-67 260.0 135 91.1
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 3.1e-67 259.2 138 89.1
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 4.1e-67 258.8 135 90.4
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 5.3e-67 258.5 135 89.6
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 1.2e-66 257.3 135 89.6
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.2e-66 257.3 135 89.6
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 1.5e-66 256.9 135 89.6
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 3.4e-66 255.8 135 89.6
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 5.9e-66 255.0 135 88.9
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 5.9e-66 255.0 135 88.9
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 7.7e-66 254.6 135 88.9
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 1.0e-65 254.2 135 88.9
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 1.7e-65 253.4 135 88.1
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 2.9e-65 252.7 135 88.1
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 8.5e-65 251.1 135 87.4
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.1e-64 250.8 135 86.7
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.1e-64 250.8 135 86.7
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 1.1e-64 250.8 135 88.1
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 1.4e-64 250.4 135 86.7
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.4e-64 250.4 135 87.4
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 1.9e-64 250.0 135 87.4
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 2.5e-64 249.6 135 87.4
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 2.5e-64 249.6 135 87.4
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 2.5e-64 249.6 135 88.1
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 3.2e-64 249.2 135 85.9
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 4.2e-64 248.8 135 86.7
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 9.4e-64 247.7 135 86.7
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 9.4e-64 247.7 135 86.7
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 9.4e-64 247.7 135 87.4
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 9.4e-64 247.7 135 87.4
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 9.4e-64 247.7 135 87.4
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 9.4e-64 247.7 135 86.7
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 9.4e-64 247.7 135 86.7
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 88.1
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 85.9
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 86.7
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 86.7
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 88.1
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 86.7
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 87.4
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 86.7
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 86.7
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.2e-63 247.3 135 86.7
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.6e-63 246.9 135 85.9
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.6e-63 246.9 142 84.5
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.6e-63 246.9 142 84.5
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 2.1e-63 246.5 135 84.4
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 2.7e-63 246.1 135 87.4
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 2.7e-63 246.1 135 85.2
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 3.6e-63 245.7 135 85.9
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 4.7e-63 245.4 135 85.9
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 4.7e-63 245.4 135 85.9
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 6.1e-63 245.0 135 85.9
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 8.0e-63 244.6 135 85.2
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 8.0e-63 244.6 135 84.4
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.0e-62 244.2 135 85.9
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 1.0e-62 244.2 135 84.4
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.4e-62 243.8 135 86.7
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.4e-62 243.8 135 86.7
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 1.4e-62 243.8 135 84.4
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 1.4e-62 243.8 135 83.0
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 1.4e-62 243.8 135 85.2
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 1.8e-62 243.4 135 84.4
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 2.3e-62 243.0 135 85.2
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 84.4
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 84.4
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 84.4
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 84.4
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 84.4
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 83.7
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.2
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 3.0e-62 242.7 135 85.9
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 3.9e-62 242.3 135 83.7
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 3.9e-62 242.3 135 84.4
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 5.2e-62 241.9 135 84.4
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 5.2e-62 241.9 135 83.0
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 5.2e-62 241.9 135 83.0
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 6.7e-62 241.5 135 85.2
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 6.7e-62 241.5 135 85.2
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 6.7e-62 241.5 135 83.7
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 6.7e-62 241.5 135 85.2
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 6.7e-62 241.5 135 84.4
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 6.7e-62 241.5 145 81.4
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 8.8e-62 241.1 135 85.2
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 8.8e-62 241.1 135 83.7
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 1.1e-61 240.7 135 85.9
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 2.0e-61 240.0 135 83.0
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 2.6e-61 239.6 135 83.7
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 2.6e-61 239.6 135 83.7
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 2.6e-61 239.6 135 83.7
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 3.3e-61 239.2 135 83.7
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 3.3e-61 239.2 135 82.2
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 3.3e-61 239.2 135 82.2
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 3.3e-61 239.2 135 83.0
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 4.4e-61 238.8 135 83.0
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 4.4e-61 238.8 135 84.4
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 4.4e-61 238.8 135 83.7
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 5.7e-61 238.4 135 82.2
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 7.4e-61 238.0 135 81.5
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.7e-60 236.9 135 83.0
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 2.2e-60 236.5 135 83.0
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 4.8e-60 235.3 135 81.5
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 6.3e-60 235.0 166 71.1
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 6.3e-60 235.0 135 80.7
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 2.4e-59 233.0 135 83.0
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 3.1e-59 232.6 135 82.2
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 1.8e-54 216.9 135 79.3
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 6.7e-54 214.9 135 72.6
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 7.0e-51 204.9 135 77.0
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 5.0e-49 198.7 134 68.7
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 6.5e-49 198.4 168 60.1
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 2.5e-48 196.4 251 46.2
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 5.5e-48 195.3 117 82.9
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.4e-46 190.7 135 65.9
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 4.0e-46 189.1 140 65.7
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 4.4e-45 185.7 135 65.2
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 2.8e-44 183.0 135 70.4
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 8.3e-44 181.4 299 39.8
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 4.1e-43 179.1 135 62.2
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 5.4e-43 178.7 131 71.0
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 2.4e-35 153.3 137 53.3
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 5.0e-33 145.6 75 89.3
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 1.2e-31 141.0 75 86.7
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 6.1e-31 138.7 84 78.6
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 1.9e-27 127.1 63 93.7
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 1.9e-27 127.1 133 49.6
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 5.4e-27 125.6 133 45.9
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 7.0e-27 125.2 64 90.6
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 1.2e-26 124.4 64 89.1
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 1.2e-26 124.4 69 81.2
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 6.0e-26 122.1 79 73.4
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 2.3e-25 120.2 64 85.9
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 2.3e-25 120.2 64 85.9
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 1.1e-24 117.9 66 83.3
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.1e-24 117.9 63 85.7
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 9.5e-24 114.8 64 82.8
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 4.6e-18 95.9 143 42.7
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 4.3e-16 89.4 65 70.8
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 2.3e-14 83.6 63 63.5
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 4.4e-13 79.3 46 82.6
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 7.8e-10 68.6 51 64.7
unitig_32.g10861 Utricularia gibba HOM05D004446 ORTHO05D005346 6.2e-07 58.9 95 44.2


User provided reference genes

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