Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035877 Chenopodium quinoa HOM05D004224 ORTHO05D006437 8.9e-287 989.6 495 100.0
AUR62014995 Chenopodium quinoa HOM05D004224 ORTHO05D006437 1.8e-207 726.1 558 72.2
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 2.0e-166 589.7 588 58.3
EL10Ac9g22662 Beta vulgaris HOM05D004224 ORTHO05D006437 4.6e-166 588.6 553 62.0
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 6.0e-150 535.0 561 57.0
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 1.8e-146 523.5 559 54.4
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 7.6e-145 518.1 557 54.4
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 9.9e-145 517.7 560 54.8
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 1.3e-144 517.3 559 54.2
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 1.3e-144 517.3 561 54.9
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 1.7e-144 516.9 561 53.8
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 2.2e-144 516.5 560 53.0
MD17G1118300 Malus domestica HOM05D004224 ORTHO05D006437 5.4e-143 511.9 560 53.4
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 9.2e-143 511.1 558 53.2
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 1.6e-142 510.4 588 51.5
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 2.1e-142 510.0 563 53.5
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 4.6e-142 508.8 561 53.5
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 1.7e-141 506.9 564 53.4
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 1.7e-141 506.9 558 52.9
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 2.3e-141 506.5 566 52.3
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 3.0e-141 506.1 558 53.9
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 3.0e-141 506.1 554 53.6
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 6.6e-141 505.0 566 52.3
Rhsim06G0178000 Rhododendron simsii HOM05D004224 ORTHO05D006437 8.6e-141 504.6 600 49.8
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 1.1e-140 504.2 563 52.6
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 1.5e-140 503.8 561 52.4
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 1.5e-140 503.8 565 51.9
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 1.9e-140 503.4 563 53.6
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 1.9e-140 503.4 563 52.0
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 9.6e-140 501.1 560 52.5
CsaV3_7G002430 Cucumis sativus L. HOM05D004224 ORTHO05D006437 1.6e-139 500.4 560 53.0
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 2.1e-139 500.0 565 51.7
FAN05G1563 Fragaria x ananassa HOM05D004224 ORTHO05D006437 2.8e-139 499.6 561 51.5
MELO3C024188.2 Cucumis melo HOM05D004224 ORTHO05D006437 4.7e-139 498.8 560 52.5
CAN.G437.10 Capsicum annuum HOM05D004224 ORTHO05D006437 6.2e-139 498.4 562 51.6
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 6.2e-139 498.4 563 52.4
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 6.2e-139 498.4 560 51.8
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 1.1e-138 497.7 560 52.3
FvH4_6g40490 Fragaria vesca HOM05D004224 ORTHO05D006437 1.8e-138 496.9 559 51.5
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 6.9e-138 495.0 513 54.8
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 9.0e-138 494.6 560 51.4
DCAR_019670 Daucus carota HOM05D004224 ORTHO05D006437 2.6e-137 493.0 565 51.7
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 3.4e-137 492.7 563 51.3
FAN10G1506 Fragaria x ananassa HOM05D004224 ORTHO05D006437 4.4e-137 492.3 560 51.4
FAN14G2615 Fragaria x ananassa HOM05D004224 ORTHO05D006437 4.4e-137 492.3 560 51.4
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 1.7e-136 490.3 559 51.9
Sed0013057 Sechium edule HOM05D004224 ORTHO05D006437 2.9e-136 489.6 560 51.4
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 4.9e-136 488.8 565 51.5
ClCG02G002970 Citrullus lanatus HOM05D004224 ORTHO05D006437 3.2e-135 486.1 534 53.2
Nitab4.5_0004852g0010 Nicotiana tabacum HOM05D004224 ORTHO05D006437 3.2e-135 486.1 565 51.2
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 3.2e-135 486.1 561 51.0
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 2.7e-134 483.0 562 50.7
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 4.6e-134 482.3 563 50.8
Migut.M00055 Erythranthe guttata HOM05D004224 ORTHO05D006437 4.6e-134 482.3 559 51.7
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 7.8e-134 481.5 566 50.4
TWI75G0912 Tripterygium wilfordii HOM05D004224 ORTHO05D006437 7.8e-134 481.5 560 52.0
PSO675G8516 Papaver somniferum HOM05D004224 ORTHO05D006437 5.1e-133 478.8 553 50.8
Lj1A799T35 Lonicera japonica HOM05D004224 ORTHO05D006437 1.1e-132 477.6 545 52.8
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 1.5e-132 477.2 558 50.9
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 4.3e-132 475.7 563 50.1
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 5.6e-132 475.3 545 51.0
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 1.3e-131 474.2 494 54.7
SGA_v2.0_scaffold73G24493 Striga asiatica HOM05D004224 ORTHO05D006437 3.6e-131 472.6 561 50.8
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 6.2e-131 471.9 566 49.1
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 8.1e-131 471.5 561 49.9
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 1.1e-130 471.1 565 49.9
PSO541G4615 Papaver somniferum HOM05D004224 ORTHO05D006437 2.4e-130 469.9 500 52.8
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 2.2e-128 463.4 554 48.9
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 6.4e-128 461.8 551 49.9
TAR629G0565 Trochodendron aralioides HOM05D004224 ORTHO05D006437 7.1e-127 458.4 537 51.0
CiPaw.03G282900 Carya illinoinensis HOM05D004224 ORTHO05D006437 9.3e-127 458.0 465 56.8
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 1.2e-126 457.6 524 51.7
Peaxi162Scf00612g00137 Petunia axillaris HOM05D004224 ORTHO05D006437 1.8e-125 453.8 513 52.2
CDE05G3447 Ceratophyllum demersum HOM05D004224 ORTHO05D006437 1.5e-124 450.7 562 48.8
TPR.G16163 Trifolium pratense HOM05D004224 ORTHO05D006437 3.3e-124 449.5 380 63.2
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 3.8e-120 436.0 500 51.2
Eucgr.A01370 Eucalyptus grandis HOM05D004224 ORTHO05D006437 1.3e-117 427.6 404 58.7
AUR62029126 Chenopodium quinoa HOM05D004224 ORTHO05D006437 3.9e-117 426.0 324 72.8
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 1.1e-116 424.5 552 47.3
ATR0751G026 Amborella trichopoda HOM05D004224 ORTHO05D006437 1.5e-116 424.1 535 47.7
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 1.5e-116 424.1 554 47.1
Gorai.004G061300 Gossypium raimondii HOM05D004224 ORTHO05D006437 2.8e-115 419.9 551 47.5
Dinv21312 Davidia involucrata HOM05D004224 ORTHO05D006437 1.2e-113 414.5 437 54.5
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 2.9e-112 409.8 563 45.1
BraA01t04368Z Brassica rapa HOM05D004224 ORTHO05D006437 4.2e-103 379.4 556 43.9
FAN09G3658 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.2e-102 377.9 350 58.6
Gohir.A07G163700 Gossypium hirsutum HOM05D004224 ORTHO05D006437 7.2e-95 352.1 326 58.3
Gohir.A08G049300 Gossypium hirsutum HOM05D004224 ORTHO05D006437 9.7e-92 341.7 551 41.9
Nitab4.5_0006992g0010 Nicotiana tabacum HOM05D004224 ORTHO05D006437 8.2e-91 338.6 206 78.6
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 2.0e-89 334.0 520 40.6
Lalb_Chr04g0259121 Lupinus albus HOM05D004224 ORTHO05D006437 1.0e-85 321.6 206 75.7
MD09G1129500 Malus domestica HOM05D004224 ORTHO05D006437 8.5e-80 302.0 317 54.3
HPP92_018978 Vanilla planifolia HOM05D004224 ORTHO05D006437 1.8e-74 284.3 374 46.8
Prupe.3G196100 Prunus persica HOM05D004224 ORTHO05D006437 2.7e-70 270.4 412 43.4
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 1.4e-69 268.1 416 44.0
Thecc.01G197400 Theobroma cacao HOM05D004224 ORTHO05D006437 3.8e-64 250.0 171 71.9
Thecc.01G197800 Theobroma cacao HOM05D003366 ORTHO05D006437 6.3e-59 232.6 151 72.8
Hund08285 Selenicereus undatus HOM05D004224 ORTHO05D006437 3.5e-57 226.9 148 75.0
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 1.1e-55 221.9 504 33.1
SMO358G0584 Selaginella moellendorffii HOM05D004224 ORTHO05D006437 1.9e-55 221.1 497 30.8
Zm00001eb189210 Zea mays HOM05D004224 ORTHO05D006437 1.4e-53 214.9 257 48.2
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 2.0e-52 211.1 501 30.7
Lalb_Chr04g0259131 Lupinus albus HOM05D004224 ORTHO05D006437 1.0e-48 198.7 266 47.7
CARHR082380 Cardamine hirsuta HOM05D004224 ORTHO05D006437 2.8e-46 190.7 268 45.9
Gohir.D08G059301 Gossypium hirsutum HOM05D004224 ORTHO05D006437 3.6e-46 190.3 277 43.7
arahy.Tifrunner.gnm1.ann1.GG41TB Arachis hypogaea HOM05D004224 ORTHO05D006437 5.8e-44 183.0 135 65.9
arahy.Tifrunner.gnm1.ann1.V7950Q Arachis hypogaea HOM05D004224 ORTHO05D006437 1.6e-38 164.9 105 73.3
Nitab4.5_0005354g0080 Nicotiana tabacum HOM05D004224 ORTHO05D006437 1.6e-30 138.3 99 69.7
arahy.Tifrunner.gnm1.ann1.96AXQD Arachis hypogaea HOM05D004224 ORTHO05D006437 5.2e-29 133.3 116 57.8
Zm00001eb058200 Zea mays HOM05D004224 ORTHO05D006437 1.7e-27 128.3 105 62.9
COL.COLO4_19640 Corchorus olitorius HOM05D004224 ORTHO05D006437 1.2e-25 122.1 75 77.3
arahy.Tifrunner.gnm1.ann1.1Z88ZW Arachis hypogaea HOM05D004224 ORTHO05D006437 2.9e-19 100.9 68 73.5
arahy.Tifrunner.gnm1.ann1.39WU8S Arachis hypogaea HOM05D004224 ORTHO05D006437 2.9e-19 100.9 78 60.3
TAR517G0004 Trochodendron aralioides HOM05D004224 ORTHO05D006437 3.2e-18 97.4 57 78.9
arahy.Tifrunner.gnm1.ann1.BMUC0J Arachis hypogaea HOM05D004224 ORTHO05D006437 2.1e-17 94.7 64 73.4
arahy.Tifrunner.gnm1.ann1.DS9TRP Arachis hypogaea HOM05D004224 ORTHO05D006437 2.1e-17 94.7 57 80.7
FAN09G3807 Fragaria x ananassa HOM05D004224 ORTHO05D006437 4.6e-17 93.6 116 48.3
CANSAT25G1750 Cannabis sativa HOM05D001816 ORTHO05D002001 1.3e-16 92.0 67 64.2
arahy.Tifrunner.gnm1.ann1.DWYC5U Arachis hypogaea HOM05D004224 ORTHO05D006437 1.5e-15 88.6 78 52.6
Zm00001eb406240 Zea mays HOM05D000464 ORTHO05D000408 1.3e-14 85.5 63 61.9
MCO04G522 Micromonas commoda HOM05D004224 ORTHO05D006437 2.8e-14 84.3 362 24.0
Zm00001eb143730 Zea mays HOM05D000464 ORTHO05D000408 3.6e-14 84.0 63 60.3
Zm00001eb438070 Zea mays HOM05D000464 ORTHO05D000408 3.6e-14 84.0 63 60.3
arahy.Tifrunner.gnm1.ann1.M7VRPU Arachis hypogaea HOM05D004224 ORTHO05D006437 1.1e-13 82.4 134 41.0
arahy.Tifrunner.gnm1.ann1.NI6VNY Arachis hypogaea HOM05D004224 ORTHO05D006437 1.4e-13 82.0 52 76.9
arahy.Tifrunner.gnm1.ann1.W9BT88 Arachis hypogaea HOM05D004224 ORTHO05D006437 1.4e-13 82.0 52 76.9
arahy.Tifrunner.gnm1.ann1.5JAS6J Arachis hypogaea HOM05D004224 ORTHO05D006437 2.4e-13 81.3 52 67.3
arahy.Tifrunner.gnm1.ann1.YYI95N Arachis hypogaea HOM05D015477 ORTHO05D006437 2.4e-13 81.3 52 67.3
TPR.G21510 Trifolium pratense HOM05D004224 ORTHO05D006437 3.1e-13 80.9 106 40.6
BolC7t41056H Brassica oleracea HOM05D004224 ORTHO05D006437 7.1e-10 69.7 94 46.8
PRCOL_00001449 Prasinoderma coloniale HOM05D004224 ORTHO05D006437 9.3e-10 69.3 104 38.5
MBI15_g33085_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D000764 2.1e-09 68.2 44 68.2
TAR517G0001 Trochodendron aralioides HOM05D004224 ORTHO05D016135 1.0e-08 65.9 106 42.5
BolC5t32389H Brassica oleracea HOM05D004224 ORTHO05D006437 8.7e-08 62.8 89 41.6
Zm00001eb342060 Zea mays HOM05D003652 ORTHO05D004190 8.7e-08 62.8 45 64.4
Cre12.g503800 Chlamydomonas reinhardtii HOM05D004224 ORTHO05D006437 1.9e-07 61.6 99 35.4
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 1.6e-06 58.5 39 64.1
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 1.6e-06 58.5 39 64.1
A03p07720 Brassica napus HOM05D004224 ORTHO05D016135 2.1e-06 58.2 39 64.1
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 2.1e-06 58.2 39 64.1
Mapoly0016s0035 Marchantia polymorpha HOM05D005656 ORTHO05D006437 2.1e-06 58.2 200 26.0
C03p85080 Brassica napus HOM05D004224 ORTHO05D016135 4.8e-06 57.0 42 61.9
C09p23550 Brassica napus HOM05D004224 ORTHO05D006437 6.2e-06 56.6 77 44.2
BolC9t55274H Brassica oleracea HOM05D004224 ORTHO05D006437 6.2e-06 56.6 77 44.2
CBR_g3670 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-06 56.2 200 27.0


User provided reference genes

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