Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 0.0e+00 1087.4 574 100.0
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 4.8e-167 592.0 573 59.5
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 3.9e-161 572.4 573 56.9
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.1e-158 564.3 573 56.0
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.6e-146 523.9 573 52.0
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 4.4e-144 515.8 573 50.8
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 7.4e-144 515.0 573 53.1
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.7e-143 513.8 573 51.1
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.7e-143 513.8 573 50.3
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.7e-143 513.8 573 50.6
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.8e-143 513.1 572 50.3
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 3.7e-143 512.7 573 50.1
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.1e-142 511.1 573 49.7
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 3.1e-142 509.6 572 49.8
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 3.4e-141 506.1 573 50.1
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 5.9e-141 505.4 571 49.9
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.3e-140 504.2 573 49.6
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 3.8e-140 502.7 574 50.2
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 3.8e-140 502.7 573 49.6
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.8e-140 502.7 573 49.4
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 6.5e-140 501.9 573 49.4
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 6.5e-140 501.9 573 50.3
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.4e-139 500.7 573 50.1
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.4e-139 500.7 573 49.7
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.9e-139 500.4 573 49.7
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 5.5e-139 498.8 573 49.9
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 2.1e-138 496.9 573 49.4
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 7.9e-138 495.0 573 49.7
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 7.9e-138 495.0 573 49.2
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 2.3e-137 493.4 579 49.9
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 3.9e-137 492.7 573 49.6
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 5.2e-137 492.3 570 49.3
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 6.7e-137 491.9 573 48.7
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.1e-136 491.1 573 49.0
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 1.5e-136 490.7 599 47.6
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 1.5e-136 490.7 573 49.2
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 2.0e-136 490.3 574 49.7
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 4.4e-136 489.2 574 49.3
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 4.4e-136 489.2 574 49.0
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 7.4e-136 488.4 573 48.9
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 9.7e-136 488.0 573 49.0
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.7e-135 487.3 573 48.3
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 2.2e-135 486.9 573 48.5
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 2.2e-135 486.9 573 48.5
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 2.8e-135 486.5 573 48.9
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 2.8e-135 486.5 573 49.2
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 3.7e-135 486.1 582 48.6
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 3.7e-135 486.1 573 48.2
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 6.3e-135 485.3 573 48.5
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.1e-134 484.6 572 47.6
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.4e-134 484.2 570 49.5
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 1.4e-134 484.2 573 48.5
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.4e-134 484.2 573 48.5
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.8e-134 483.8 568 48.8
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 3.1e-134 483.0 573 48.3
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 3.1e-134 483.0 571 48.3
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 4.1e-134 482.6 574 48.8
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 5.3e-134 482.3 573 48.7
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 5.3e-134 482.3 574 48.6
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 7.0e-134 481.9 558 49.3
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 9.1e-134 481.5 574 48.6
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.2e-133 481.1 573 48.3
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 1.2e-133 481.1 573 48.7
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.2e-133 481.1 574 49.0
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.2e-133 481.1 572 47.4
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.6e-133 480.7 574 48.6
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.6e-133 479.9 571 47.8
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 3.5e-133 479.6 573 48.0
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 4.5e-133 479.2 573 48.2
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 5.9e-133 478.8 571 48.2
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 7.7e-133 478.4 573 47.3
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.3e-132 477.6 541 51.2
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 2.9e-132 476.5 574 47.2
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 5.0e-132 475.7 573 47.8
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 8.5e-132 474.9 573 47.5
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.5e-131 474.2 573 47.8
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 4.2e-131 472.6 571 46.9
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 7.2e-131 471.9 609 46.3
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 1.2e-130 471.1 554 49.3
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.2e-130 471.1 572 47.0
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.6e-130 470.7 573 48.3
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 2.7e-130 469.9 616 47.7
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 8.0e-130 468.4 573 46.4
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 8.0e-130 468.4 573 46.4
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.0e-129 468.0 572 46.3
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 2.3e-129 466.8 570 46.8
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 3.0e-129 466.5 574 47.2
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 4.0e-129 466.1 572 46.3
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 6.7e-129 465.3 590 46.4
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 8.8e-129 464.9 572 47.4
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 3.3e-128 463.0 572 48.1
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 7.5e-128 461.8 600 45.7
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 7.5e-128 461.8 572 47.0
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 2.4e-126 456.8 571 46.6
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 2.4e-126 456.8 559 47.2
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.4e-126 456.8 573 47.1
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 3.1e-126 456.4 587 46.0
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.0e-125 453.8 573 46.4
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 2.7e-125 453.4 571 46.2
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 4.5e-125 452.6 573 46.2
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 6.5e-124 448.7 573 46.2
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 2.5e-123 446.8 573 46.6
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 4.2e-123 446.0 574 46.5
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.0e-121 441.4 572 46.2
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 4.0e-121 439.5 573 45.5
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 4.0e-121 439.5 572 45.6
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.7e-119 434.1 609 43.8
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 3.1e-118 429.9 541 46.8
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 3.5e-117 426.4 558 45.9
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.5e-115 419.1 573 43.8
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.8e-113 414.1 572 43.7
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 9.8e-112 408.3 573 43.8
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 7.0e-110 402.1 573 43.1
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.5e-107 393.7 573 43.1
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 4.4e-104 382.9 519 44.9
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 5.9e-101 372.5 571 39.8
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 2.0e-96 357.5 577 38.6
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 4.0e-89 333.2 513 41.1
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 4.1e-86 323.2 573 38.6
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 6.4e-71 272.7 184 75.5
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 4.6e-69 266.5 147 84.4
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 5.6e-59 233.0 162 66.7
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 2.4e-57 227.6 184 65.8
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 1.6e-50 204.9 131 74.8
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 9.0e-49 199.1 557 30.3
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 5.5e-46 189.9 112 81.2
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 3.2e-38 164.1 112 72.3
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 3.7e-34 150.6 117 67.5
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.5e-32 145.2 81 81.5
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 5.1e-28 130.2 80 76.2
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 2.4e-25 121.3 83 69.9
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 3.5e-16 90.9 54 77.8
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 2.6e-11 74.7 162 30.9
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.8e-09 68.6 44 68.2
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 6.5e-07 60.1 37 67.6


User provided reference genes

Program Settings