Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 0.0e+00 1107.0 550 100.0
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.4e-309 1065.4 550 96.2
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.9e-274 948.7 556 84.9
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.1e-261 906.4 557 79.2
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.4e-256 889.4 554 78.5
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.8e-256 889.0 556 78.6
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 2.4e-256 888.6 559 79.6
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.5e-255 885.9 601 75.4
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 5.8e-255 884.0 557 78.1
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 7.6e-255 883.6 554 78.2
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 8.4e-254 880.2 557 78.1
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.4e-253 879.4 559 77.1
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.9e-253 879.0 556 77.5
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 3.2e-253 878.2 558 80.8
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 3.2e-253 878.2 559 76.9
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 9.3e-253 876.7 558 77.1
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.0e-251 873.2 559 76.9
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.8e-251 872.5 557 77.0
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 1.8e-251 872.5 556 76.6
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 8.7e-251 870.2 556 76.4
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 8.7e-251 870.2 557 75.4
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 2.5e-250 868.6 575 75.3
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 2.5e-250 868.6 556 76.6
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 3.3e-250 868.2 560 75.7
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 3.3e-250 868.2 557 76.3
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 4.3e-250 867.8 557 76.8
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 5.6e-250 867.5 556 76.1
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.6e-250 867.5 559 76.0
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 7.4e-250 867.1 556 76.3
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.3e-249 866.3 560 75.5
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.3e-249 866.3 557 76.8
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.8e-249 865.1 555 75.5
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.8e-249 865.1 557 75.6
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.7e-249 864.8 574 75.6
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.2e-249 864.0 559 75.7
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 6.2e-249 864.0 558 76.5
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.4e-248 862.8 559 76.2
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.8e-248 862.4 557 76.1
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.1e-248 861.7 559 75.5
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.3e-248 860.9 558 76.5
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.2e-247 859.8 557 76.5
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.2e-247 859.8 553 75.8
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 7.6e-247 857.1 560 75.4
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.0e-246 856.7 557 74.1
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.0e-246 856.7 558 75.8
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 1.7e-246 855.9 565 74.9
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 2.2e-246 855.5 557 75.0
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 3.8e-246 854.7 557 76.8
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 6.5e-246 854.0 541 77.4
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.1e-245 853.2 554 76.0
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 1.9e-245 852.4 557 75.0
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 4.2e-245 851.3 557 76.3
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 9.3e-245 850.1 557 75.9
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 9.3e-245 850.1 557 75.0
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.2e-244 849.7 558 74.7
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.2e-244 849.7 555 75.5
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 6.0e-244 847.4 558 74.6
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 8.7e-243 843.6 558 74.4
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 8.7e-243 843.6 557 74.5
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 4.3e-242 841.3 558 73.7
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 5.7e-242 840.9 557 75.0
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.1e-240 836.6 525 78.5
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.1e-240 836.6 560 73.0
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.4e-240 836.3 557 72.7
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.8e-240 835.9 586 71.3
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 4.1e-240 834.7 557 74.7
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 5.3e-240 834.3 558 73.7
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.2e-239 833.2 537 76.5
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.6e-239 832.0 557 73.2
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 2.6e-239 832.0 559 73.0
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 2.2e-238 828.9 560 72.9
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 3.8e-238 828.2 553 73.1
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.9e-237 825.9 557 73.1
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 4.2e-237 824.7 541 74.7
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.2e-237 824.7 575 71.1
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 3.6e-236 821.6 557 72.2
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.1e-236 820.8 559 72.3
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.1e-236 820.8 559 72.3
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.1e-236 820.8 559 72.3
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 7.9e-236 820.5 558 72.9
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 4.3e-234 814.7 559 72.3
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 5.7e-234 814.3 559 72.5
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 9.7e-234 813.5 559 72.5
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.3e-233 813.1 560 71.8
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 2.2e-233 812.4 551 71.9
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.2e-233 812.4 538 73.8
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.8e-233 812.0 556 71.4
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.4e-232 808.9 552 72.5
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 4.1e-232 808.1 559 71.6
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 4.1e-232 808.1 542 72.9
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 6.9e-232 807.4 556 70.9
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 2.0e-231 805.8 565 71.7
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 7.7e-231 803.9 556 71.8
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 1.3e-230 803.1 557 71.6
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.3e-230 803.1 559 71.2
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.7e-230 802.7 548 70.4
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 2.2e-230 802.4 565 71.3
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 2.9e-230 802.0 565 71.2
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 2.9e-230 802.0 531 75.5
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 2.9e-230 802.0 514 77.0
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 5.0e-230 801.2 559 71.0
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 2.5e-229 798.9 577 69.8
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 1.2e-228 796.6 561 73.1
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 3.9e-227 791.6 558 70.8
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 5.1e-227 791.2 572 69.6
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 1.1e-224 783.5 540 71.9
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 4.1e-224 781.6 553 70.3
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.0e-222 774.6 602 66.3
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.4e-221 773.1 562 69.9
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 2.5e-221 772.3 553 69.4
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 1.4e-216 756.5 558 68.3
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.5e-213 745.7 560 67.3
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 4.7e-212 741.5 490 74.7
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 6.1e-212 741.1 545 68.8
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 6.1e-212 741.1 442 79.6
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.3e-211 739.2 557 63.9
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 4.5e-207 724.9 488 71.9
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.2e-205 718.8 545 67.3
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.9e-197 693.0 549 61.7
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.1e-192 675.6 563 62.7
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 7.3e-189 664.5 390 82.3
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 5.0e-182 641.7 433 73.2
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.6e-178 629.4 545 59.1
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.9e-177 625.9 550 55.6
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.3e-174 617.1 391 76.0
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.0e-170 603.2 390 76.2
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 9.2e-160 567.8 510 58.2
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 1.3e-158 563.9 550 53.3
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-153 547.4 486 55.3
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 2.7e-151 539.7 322 79.8
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 4.6e-135 485.7 308 78.2
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.1e-134 482.3 292 78.4
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 7.9e-127 458.4 336 67.6
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 1.5e-125 454.1 322 68.3
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 2.5e-125 453.4 321 69.5
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 9.0e-123 444.9 291 73.9
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 7.7e-114 415.2 266 75.6
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 7.2e-104 382.1 273 68.5
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.8e-100 369.4 246 74.0
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 7.7e-98 362.1 238 76.5
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.2e-93 348.2 247 70.4
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 3.7e-84 316.6 240 67.9
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 3.7e-76 290.0 267 56.6
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 7.5e-53 212.6 141 75.2
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.2e-50 205.3 137 73.7
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 1.6e-50 204.9 193 58.0
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.3e-49 201.1 139 71.2
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.6e-49 199.1 138 71.0
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.5e-48 198.4 139 70.5
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 9.9e-45 185.7 128 71.9
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 5.4e-35 153.3 98 74.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 5.1e-33 146.7 98 72.4
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.3e-25 122.1 107 59.8
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 3.4e-21 107.5 63 76.2
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 4.5e-21 107.1 63 76.2
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.2e-20 104.8 71 66.2
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-19 102.4 63 73.0
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 8.7e-17 92.8 57 68.4
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.1e-16 92.4 63 71.4
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.7e-16 90.1 63 69.8
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 6.2e-15 86.7 489 24.9
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.8e-14 85.1 237 26.6
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.5e-13 82.0 350 24.9
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 7.6e-13 79.7 54 70.4
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 3.2e-11 74.3 73 56.2
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.1e-08 65.9 52 55.8
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.3e-06 57.0 61 44.3


User provided reference genes

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