Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.8e-163 578.6 298 100.0
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.5e-113 412.1 342 69.6
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 1.8e-96 356.7 286 63.6
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 2.3e-96 356.3 291 63.9
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 5.0e-83 312.0 289 57.4
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 2.4e-77 293.1 284 53.2
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 5.7e-71 271.9 293 49.8
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 1.1e-69 267.7 286 50.0
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 5.3e-69 265.4 289 49.8
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.2e-68 264.2 267 50.9
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 1.5e-68 263.8 285 49.8
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 5.9e-68 261.9 285 47.7
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.3e-67 260.8 285 48.1
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.3e-67 260.8 278 49.6
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 2.2e-67 260.0 285 47.4
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 3.8e-67 259.2 285 47.0
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.1e-66 257.7 291 48.1
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 7.2e-66 255.0 290 49.3
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 7.2e-66 255.0 285 46.3
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 1.2e-65 254.2 290 49.3
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 2.1e-65 253.4 287 48.4
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 6.1e-65 251.9 234 56.0
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 7.9e-65 251.5 290 47.6
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 7.9e-65 251.5 290 49.3
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.0e-64 251.1 314 45.5
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 1.0e-64 251.1 281 46.3
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.0e-64 251.1 285 46.0
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 3.0e-64 249.6 287 47.0
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 5.2e-64 248.8 285 48.1
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 1.5e-63 247.3 287 46.7
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 1.5e-63 247.3 286 50.0
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 2.6e-63 246.5 286 45.8
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 2.6e-63 246.5 288 47.2
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 4.4e-63 245.7 297 47.8
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 9.7e-63 244.6 290 47.6
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.3e-62 244.2 282 47.2
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 3.7e-62 242.7 286 46.5
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 4.8e-62 242.3 269 45.4
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 4.8e-62 242.3 288 46.5
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 4.8e-62 242.3 285 44.6
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 6.3e-62 241.9 288 45.8
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 8.2e-62 241.5 286 47.2
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 1.1e-61 241.1 279 46.2
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 1.4e-61 240.7 289 45.7
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 1.4e-61 240.7 294 46.9
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 2.4e-61 240.0 287 44.9
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 5.3e-61 238.8 230 50.4
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 9.1e-61 238.0 237 52.3
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.2e-60 237.7 282 47.5
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 5.9e-60 235.3 281 44.1
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.7e-59 233.8 286 45.8
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 5.5e-58 228.8 278 45.7
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 1.2e-57 227.6 293 45.1
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.2e-57 227.6 288 44.8
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 3.6e-57 226.1 281 43.1
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 8.0e-57 224.9 291 43.0
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 1.4e-56 224.2 282 45.0
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 3.0e-56 223.0 274 44.9
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 3.0e-56 223.0 290 45.5
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 3.0e-56 223.0 282 44.7
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 3.0e-56 223.0 286 44.8
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 1.5e-55 220.7 253 47.0
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.5e-55 220.7 287 42.9
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 1.3e-54 217.6 282 45.0
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 1.7e-54 217.2 286 40.6
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 1.7e-54 217.2 289 44.6
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 8.2e-54 214.9 289 42.2
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 8.2e-54 214.9 285 43.5
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 1.1e-53 214.5 196 57.7
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 1.1e-53 214.5 242 47.1
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 1.4e-53 214.2 274 42.3
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 9.1e-53 211.5 280 43.2
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 1.2e-52 211.1 287 42.9
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 2.7e-52 209.9 255 44.7
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 3.5e-52 209.5 239 48.1
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 7.7e-52 208.4 288 42.0
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 7.7e-52 208.4 293 43.0
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 2.9e-51 206.5 286 40.9
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 2.9e-51 206.5 291 41.6
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 2.9e-51 206.5 284 41.5
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 3.8e-51 206.1 287 41.5
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 8.5e-51 204.9 287 40.4
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 5.5e-50 202.2 235 47.7
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 9.4e-50 201.4 286 40.6
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 2.7e-49 199.9 209 50.2
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 1.4e-48 197.6 290 41.0
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 1.4e-48 197.6 290 41.0
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 5.2e-48 195.7 233 46.4
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 1.5e-47 194.1 289 39.8
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.0e-47 193.7 358 36.9
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 7.5e-47 191.8 290 40.3
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 9.8e-47 191.4 290 40.3
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 9.8e-47 191.4 290 40.3
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.7e-46 190.7 282 41.1
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 1.6e-44 184.1 205 50.2
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 5.9e-44 182.2 280 36.8
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.7e-43 180.6 280 37.1
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 7.2e-42 175.3 188 50.0
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.6e-41 172.9 242 41.3
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 8.0e-41 171.8 219 47.0
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 3.0e-40 169.9 284 38.0
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 5.2e-40 169.1 196 46.9
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 4.9e-38 162.5 284 38.0
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 5.9e-36 155.6 278 37.1
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.0e-35 154.8 271 33.6
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 1.2e-33 147.9 138 54.3
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 5.9e-28 129.0 153 47.7
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 1.7e-27 127.5 131 51.9
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 3.3e-26 123.2 170 37.1
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 3.7e-22 109.8 228 33.8
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 2.3e-19 100.5 280 30.4
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 1.1e-18 98.2 282 27.3
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 1.9e-18 97.4 130 39.2
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 4.9e-14 82.8 116 39.7
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 6.4e-14 82.4 115 41.7
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.6e-12 77.8 197 26.9
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 4.7e-09 66.2 124 36.3
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 1.2e-07 61.6 170 28.2
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 4.4e-07 59.7 70 47.1
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 3.8e-06 56.6 175 27.4


User provided reference genes

Program Settings