Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.1e-229 796.6 409 100.0
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.5e-223 779.2 409 97.6
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 2.0e-191 672.5 409 84.8
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 3.5e-180 635.2 409 80.2
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.4e-173 612.5 409 77.5
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.7e-172 609.0 409 78.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.3e-171 606.7 410 76.6
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 5.6e-170 601.3 409 76.3
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 9.6e-170 600.5 408 76.0
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.6e-169 599.7 409 76.0
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.6e-169 599.7 410 76.6
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 2.1e-169 599.4 409 76.3
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.7e-169 598.2 409 76.3
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 8.1e-169 597.4 409 76.5
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.4e-168 596.7 409 74.3
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 2.6e-167 592.4 413 75.3
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 5.8e-167 591.3 412 75.5
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.7e-166 589.7 412 75.2
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.2e-166 589.3 409 74.8
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.9e-166 588.2 409 74.8
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.9e-165 586.3 409 74.8
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 3.2e-165 585.5 411 74.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 5.4e-165 584.7 410 73.2
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 7.1e-165 584.3 409 74.6
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.1e-164 582.8 409 72.9
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 2.1e-164 582.8 407 76.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.1e-164 582.8 411 74.0
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.7e-164 582.4 410 75.1
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 4.6e-164 581.6 407 74.0
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 6.0e-164 581.3 409 74.1
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 7.8e-164 580.9 409 73.1
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.0e-163 580.5 421 73.9
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.0e-163 580.5 409 73.3
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.3e-163 580.1 409 71.9
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.7e-163 579.7 409 74.6
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.3e-163 579.3 408 75.0
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.1e-163 578.2 421 73.6
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 6.6e-163 577.8 409 74.6
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 8.7e-163 577.4 409 74.1
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.1e-162 577.0 409 73.6
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.5e-162 576.6 417 72.9
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.5e-162 576.6 409 73.3
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.9e-162 576.2 409 73.3
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.5e-162 575.9 425 72.2
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.5e-162 575.9 409 74.1
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 3.3e-162 575.5 409 72.9
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 4.3e-162 575.1 409 72.6
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 5.6e-162 574.7 409 74.1
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 7.3e-162 574.3 409 72.9
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 9.6e-162 573.9 407 74.7
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.3e-161 573.5 413 71.9
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.6e-161 573.2 412 73.3
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 6.2e-161 571.2 409 72.9
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 6.2e-161 571.2 408 72.8
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.1e-161 570.9 441 70.5
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 8.1e-161 570.9 415 72.0
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.4e-160 569.3 412 72.6
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 2.4e-160 569.3 412 72.6
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 4.0e-160 568.5 414 72.2
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 5.3e-160 568.2 412 72.8
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 5.3e-160 568.2 409 72.9
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 6.9e-160 567.8 441 69.8
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.2e-159 567.0 411 72.0
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.5e-159 566.6 414 72.5
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 2.0e-159 566.2 421 71.7
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.4e-159 565.5 412 71.8
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 4.5e-159 565.1 422 70.6
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.6e-159 564.3 409 71.6
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 7.6e-159 564.3 409 70.7
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 9.9e-159 563.9 409 71.9
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 3.8e-158 562.0 416 72.1
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 3.8e-158 562.0 410 72.2
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 4.9e-158 561.6 415 72.3
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 6.4e-158 561.2 408 73.0
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.1e-157 560.5 410 72.7
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 3.2e-157 558.9 417 70.5
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 3.2e-157 558.9 412 72.3
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 5.4e-157 558.1 410 72.4
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.7e-156 555.8 410 70.7
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 2.7e-156 555.8 410 70.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 7.9e-156 554.3 446 67.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.0e-155 553.9 430 69.5
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 3.0e-155 552.4 411 70.8
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 3.0e-155 552.4 412 70.1
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.9e-155 552.0 411 70.8
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.5e-154 550.1 409 71.1
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.5e-154 549.3 419 69.7
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.6e-154 548.1 409 69.2
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.3e-153 547.0 415 70.4
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.6e-153 546.6 409 68.9
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.8e-153 545.8 411 70.1
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.7e-153 545.4 411 69.8
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.1e-153 544.3 409 68.9
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.0e-152 542.0 419 67.1
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 6.9e-152 541.2 409 69.9
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 4.2e-149 531.9 414 68.8
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 3.5e-148 528.9 358 75.4
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 5.1e-147 525.0 410 68.8
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 9.6e-146 520.8 338 79.0
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.8e-144 516.5 394 69.5
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.5e-142 508.1 376 72.1
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.5e-142 508.1 376 72.1
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.5e-142 508.1 410 67.3
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.5e-138 496.9 473 59.6
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.5e-138 496.9 473 59.6
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.6e-137 493.4 345 72.5
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 2.2e-134 483.0 350 71.1
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 5.0e-134 481.9 311 78.1
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.0e-130 469.9 416 62.5
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 7.4e-130 468.0 412 58.5
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 8.2e-129 464.5 359 68.2
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.3e-126 457.2 409 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 1.2e-119 434.1 419 53.5
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.2e-111 407.5 425 55.8
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 6.5e-110 401.7 368 55.7
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.1e-109 401.0 320 67.8
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 3.2e-109 399.4 268 77.2
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 2.6e-106 389.8 409 56.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.8e-92 343.2 358 56.4
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.7e-89 334.0 319 59.6
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.3e-81 307.8 317 52.7
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.0e-78 298.1 415 42.7
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.0e-74 283.9 263 60.1
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 3.5e-71 273.1 416 40.1
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 5.2e-67 259.2 455 36.3
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.4e-66 256.5 459 36.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.1e-59 235.0 321 45.5
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.9e-57 226.1 126 85.7
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 5.3e-51 206.1 147 70.7
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.6e-50 203.8 133 85.0
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.8e-49 199.9 311 40.8
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.4e-48 198.0 347 35.2
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.5e-47 193.4 131 77.1
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 6.0e-47 192.6 326 36.5
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.6e-42 177.2 110 80.0
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.6e-42 177.2 113 77.0
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.1e-37 161.8 112 73.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.0e-34 151.0 101 82.2
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 2.5e-29 134.0 95 68.4
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 1.6e-23 114.8 65 86.2
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.1e-23 114.4 129 51.9
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.8e-19 101.3 58 79.3
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.2e-17 94.4 135 43.0
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.7e-15 87.4 72 63.9
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 2.0e-13 81.3 99 51.5
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 2.5e-13 80.9 65 63.1
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.8e-11 74.7 57 70.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 4.1e-11 73.6 101 41.6
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.6e-10 70.9 52 63.5
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 4.5e-10 70.1 44 79.5
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.7e-09 68.2 44 77.3
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.9e-09 67.4 70 54.3
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.2e-07 62.0 48 64.6
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-07 60.5 125 30.4
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 4.7e-07 60.1 125 29.6
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 6.1e-07 59.7 125 29.6
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 6.1e-07 59.7 125 29.6
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 7.9e-07 59.3 129 29.5
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 7.9e-07 59.3 125 29.6
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 1.8e-06 58.2 36 75.0
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 1.8e-06 58.2 36 75.0
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 1.8e-06 58.2 36 75.0
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-06 57.8 125 29.6
CBR_g37104 Chara braunii HOM05D000505 ORTHO05D001303 3.0e-06 57.4 119 31.1
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 5.1e-06 56.6 42 66.7
Sopen05g011340 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 55.8 129 29.5


User provided reference genes

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