Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 0.0e+00 2075.8 1029 100.0
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 0.0e+00 1626.3 881 91.7
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 0.0e+00 1413.3 1016 71.1
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 2.0e-285 986.1 782 66.2
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 1.9e-254 883.2 941 52.3
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 1.6e-245 853.6 1039 46.3
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 2.7e-245 852.8 1041 46.1
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 4.6e-245 852.0 1048 46.5
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 4.6e-237 825.5 1061 44.4
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 2.5e-227 793.1 1027 43.1
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 8.1e-226 788.1 1072 43.3
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 6.9e-225 785.0 1066 41.8
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 4.5e-224 782.3 1021 45.0
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.3e-194 684.5 1001 40.2
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 6.5e-183 645.6 1023 40.1
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 1.0e-180 638.3 1025 39.6
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 6.8e-180 635.6 1021 39.0
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 9.8e-179 631.7 1033 39.4
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 1.7e-178 630.9 1016 38.6
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 2.4e-177 627.1 1022 38.7
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.0e-176 624.0 1031 39.3
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 7.7e-176 622.1 1025 39.4
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 7.7e-176 622.1 1030 38.1
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 2.9e-175 620.2 1033 38.6
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 2.5e-174 617.1 1036 38.5
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 9.4e-174 615.1 1020 37.4
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.2e-173 614.8 1036 37.6
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 2.2e-170 604.0 1037 36.5
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 8.3e-170 602.1 1016 37.2
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 4.5e-168 596.3 1036 38.1
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 2.5e-166 590.5 1021 36.9
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 2.5e-166 590.5 1025 37.3
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 5.6e-166 589.3 1017 35.5
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 5.6e-166 589.3 1017 37.0
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 7.2e-166 589.0 1030 36.6
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 3.0e-164 583.6 1018 36.7
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.2e-164 582.8 1016 37.0
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.2e-164 582.8 1017 36.8
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.6e-160 571.2 1021 36.6
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 6.6e-159 565.8 1018 36.3
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 4.7e-157 559.7 1010 35.8
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 3.1e-156 557.0 1039 34.3
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 5.8e-155 552.7 989 36.6
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.2e-152 545.0 985 36.3
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 3.0e-151 540.4 1010 34.3
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 1.5e-150 538.1 1026 33.4
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.6e-149 534.6 1026 34.2
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 3.1e-148 530.4 1013 34.4
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 6.8e-148 529.3 1026 33.0
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 1.2e-147 528.5 1020 35.0
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 3.4e-147 526.9 1022 33.1
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 1.3e-146 525.0 1019 32.9
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 3.7e-146 523.5 1023 33.4
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 1.9e-145 521.2 812 39.0
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 2.7e-144 517.3 1030 32.6
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.0e-143 515.4 1052 34.2
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.3e-143 515.0 1008 34.3
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 2.3e-143 514.2 1025 33.0
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 2.3e-143 514.2 1036 32.6
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 3.9e-143 513.5 1023 33.5
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 5.1e-143 513.1 1037 35.5
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.9e-142 511.1 1029 32.4
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 2.5e-142 510.8 1033 31.9
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 3.3e-142 510.4 1029 35.7
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 3.3e-142 510.4 1030 32.6
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 1.6e-141 508.1 1027 33.7
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 4.7e-141 506.5 1019 32.9
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 4.7e-141 506.5 1019 33.4
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 8.1e-141 505.8 1019 33.3
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 8.1e-141 505.8 1019 33.0
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 8.1e-141 505.8 1026 32.5
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.5e-139 501.5 1039 32.7
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 2.0e-139 501.1 1022 32.6
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 4.4e-139 500.0 1021 31.7
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.4e-139 500.0 1058 33.2
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 1.1e-137 495.4 1030 31.9
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.1e-136 491.1 1025 31.2
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 6.0e-136 489.6 577 48.0
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 1.1e-134 485.3 1026 31.6
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 7.3e-134 482.6 605 45.6
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 9.6e-134 482.3 946 34.6
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.7e-133 479.9 1050 32.1
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 6.2e-133 479.6 1030 32.2
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 1.8e-132 478.0 1047 31.4
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 4.0e-132 476.9 1051 31.4
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 8.4e-130 469.2 1052 32.4
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 3.2e-129 467.2 1013 31.3
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 8.1e-125 452.6 619 41.0
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 8.1e-125 452.6 966 32.8
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.2e-120 438.7 749 38.7
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 5.6e-118 429.9 721 39.5
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 2.8e-117 427.6 446 51.6
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 1.7e-114 418.3 1232 26.9
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 2.4e-113 414.5 929 30.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.7e-111 406.4 624 39.4
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 1.4e-105 388.7 878 32.5
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.3e-102 377.5 644 37.4
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.3e-101 375.6 712 34.8
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 1.9e-97 361.7 996 28.8
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 7.2e-97 359.8 739 32.5
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 1.6e-93 348.6 1154 28.0
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 4.5e-91 340.5 533 38.5
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.0e-90 339.3 801 30.0
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.0e-87 329.3 1063 27.5
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 5.7e-86 323.6 707 31.1
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 1.9e-81 308.5 590 33.1
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.8e-79 302.0 786 29.4
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 6.7e-79 300.1 367 44.1
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 2.6e-78 298.1 1031 26.2
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 1.0e-66 259.6 664 30.4
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 8.0e-64 250.0 306 47.7
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 5.9e-59 233.8 202 55.0
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.5e-57 229.2 347 38.0
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 5.2e-55 220.7 158 61.4
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.9e-50 204.9 330 39.1
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 4.3e-49 201.1 313 39.6
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.6e-46 191.8 159 50.9
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 4.9e-45 187.6 173 51.4
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.2e-43 183.0 176 49.4
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 7.8e-43 180.3 204 44.6
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 8.0e-40 170.2 269 37.2
AUR62037718 Chenopodium quinoa HOM05D000493 ORTHO05D007622 1.0e-39 169.9 139 67.6
AUR62042888 Chenopodium quinoa HOM05D000493 ORTHO05D007622 1.5e-38 166.0 109 78.9
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 3.4e-38 164.9 303 36.3
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 3.6e-32 144.8 338 31.1
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.4e-28 132.9 442 27.4
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 3.2e-28 131.7 108 56.5
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 3.0e-26 125.2 288 28.1
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.2e-24 119.8 231 32.9
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 3.6e-24 118.2 109 56.9
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 3.4e-22 111.7 87 55.2
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 8.4e-21 107.1 191 37.2
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 7.1e-20 104.0 223 32.7
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 6.0e-19 100.9 83 50.6
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.1e-15 90.1 118 39.8
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 2.6e-14 85.5 172 35.5
Ah.09g232780 Amaranthus hybridus HOM05D005399 ORTHO05D006347 1.1e-12 80.1 238 29.4
MBI17_g10900_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 8.1e-08 63.9 62 51.6


User provided reference genes

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