Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035612 Chenopodium quinoa HOM05D002916 ORTHO05D003152 2.2e-85 318.9 163 100.0
AUR62006014 Chenopodium quinoa HOM05D002916 ORTHO05D003152 2.4e-79 298.9 164 94.5
EL10Ac3g05193 Beta vulgaris HOM05D002916 ORTHO05D003152 1.3e-53 213.4 164 68.9
EL10Ac3g05192 Beta vulgaris HOM05D002916 ORTHO05D003152 1.6e-43 179.9 136 68.4
EL10Ac4g08766 Beta vulgaris HOM05D002916 ORTHO05D003152 3.6e-35 152.1 97 75.3
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 1.0e-21 107.5 164 43.9
Sc13g0010210 Simmondsia chinensis HOM05D002916 ORTHO05D003152 1.0e-21 107.5 128 44.5
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 1.3e-21 107.1 150 43.3
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.9e-20 103.2 169 40.8
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 1.9e-20 103.2 149 43.6
EL10Ac3g05191 Beta vulgaris HOM05D002916 ORTHO05D003152 2.1e-19 99.8 89 56.2
Ah.13g070720 Amaranthus hybridus HOM05D002916 ORTHO05D003152 3.6e-19 99.0 149 42.3
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 4.7e-19 98.6 171 41.5
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 1.0e-18 97.4 158 41.8
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 1.0e-18 97.4 169 40.2
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.4e-18 97.1 169 37.9
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 2.3e-18 96.3 158 42.4
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 4.0e-18 95.5 165 40.0
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 6.8e-18 94.7 165 37.0
Manes.01G042300 Manihot esculenta HOM05D002916 ORTHO05D003152 2.0e-17 93.2 166 37.3
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 3.4e-17 92.4 165 38.8
QL02p027552 Quercus lobata HOM05D002916 ORTHO05D003152 3.4e-17 92.4 125 44.8
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 5.8e-17 91.7 167 40.1
COL.COLO4_14359 Corchorus olitorius HOM05D002916 ORTHO05D003152 9.8e-17 90.9 157 39.5
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 2.9e-16 89.4 173 39.9
Actinidia34261 Actinidia chinensis HOM05D002916 ORTHO05D003152 3.7e-16 89.0 146 42.5
Atru.chr12.2401 Acer truncatum HOM05D002916 ORTHO05D003152 8.3e-16 87.8 159 35.2
Phvul.009G046400 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 1.1e-15 87.4 165 35.8
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 1.4e-15 87.0 171 38.0
TWI23G0095 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 2.4e-15 86.3 121 40.5
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 3.2e-15 85.9 134 38.8
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 4.1e-15 85.5 146 37.0
Haze_09193 Corylus avellana HOM05D002916 ORTHO05D003152 7.0e-15 84.7 151 38.4
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.2e-14 84.0 144 40.3
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.2e-14 84.0 144 39.6
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.6e-14 83.6 144 39.6
Nn3g18859 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.7e-14 82.8 153 38.6
Lalb_Chr08g0239761 Lupinus albus HOM05D002916 ORTHO05D003152 4.6e-14 82.0 163 37.4
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 4.6e-14 82.0 157 38.2
Duzib068G0006 Durio zibethinus HOM05D002916 ORTHO05D003152 6.0e-14 81.6 129 39.5
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 2.3e-13 79.7 133 38.3
Potri.015G005700 Populus trichocarpa HOM05D002916 ORTHO05D003152 6.6e-13 78.2 136 38.2
Manes.12G116500 Manihot esculenta HOM05D002916 ORTHO05D003152 1.1e-12 77.4 129 38.8
RcHm_v2.0_Chr1g0382771 Rosa chinensis HOM05D002916 ORTHO05D003152 1.1e-12 77.4 174 35.6
TPR.G36204 Trifolium pratense HOM05D002916 ORTHO05D003152 1.5e-12 77.0 132 37.1
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 1.9e-12 76.6 136 35.3
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 1.9e-12 76.6 168 30.4
CANSAT21G0001 Cannabis sativa HOM05D002916 ORTHO05D003152 3.3e-12 75.9 114 42.1
PSO478G4364 Papaver somniferum HOM05D002916 ORTHO05D003152 3.3e-12 75.9 129 33.3
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 5.6e-12 75.1 128 36.7
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.5e-12 74.3 133 33.8
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 9.5e-12 74.3 133 33.8
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 1.2e-11 73.9 140 35.7
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 4.7e-11 72.0 162 30.2
Ca_16766_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 6.2e-11 71.6 133 37.6
FAN03G0202 Fragaria x ananassa HOM05D002916 ORTHO05D003152 6.2e-11 71.6 150 33.3
Sabra05G0140200 Salix brachista HOM05D002916 ORTHO05D003152 8.0e-11 71.2 118 39.0
FAN10G3649 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.1e-10 70.9 147 35.4
PSO478G4153 Papaver somniferum HOM05D002916 ORTHO05D003152 1.1e-10 70.9 130 33.1
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 1.8e-10 70.1 133 31.6
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 1.8e-10 70.1 133 31.6
FAN10G0037 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.8e-10 70.1 147 35.4
VMungo0251G1524 Vigna mungo HOM05D002255 ORTHO05D002288 1.8e-10 70.1 146 32.9
Eucgr.K00425 Eucalyptus grandis HOM05D002916 ORTHO05D003152 2.3e-10 69.7 140 37.1
Phvul.002G300100 Phaseolus vulgaris HOM05D002255 ORTHO05D002288 2.3e-10 69.7 143 32.2
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 3.1e-10 69.3 137 33.6
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 5.2e-10 68.6 143 36.4
Migut.F00158 Erythranthe guttata HOM05D002916 ORTHO05D003152 5.2e-10 68.6 180 31.1
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 6.8e-10 68.2 150 30.7
FAN01G1170 Fragaria x ananassa HOM05D002916 ORTHO05D003152 6.8e-10 68.2 147 36.1
CsaV3_5G000050 Cucumis sativus L. HOM05D002916 ORTHO05D003152 8.9e-10 67.8 136 30.9
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 1.2e-09 67.4 128 35.2
PGR042G3508 Punica granatum HOM05D002916 ORTHO05D003152 1.5e-09 67.0 142 33.1
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 3.4e-09 65.9 133 30.8
MELO3C005922.2 Cucumis melo HOM05D002916 ORTHO05D003152 3.4e-09 65.9 138 30.4
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 3.4e-09 65.9 142 34.5
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 3.4e-09 65.9 133 33.1
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 4.4e-09 65.5 133 30.8
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 4.4e-09 65.5 140 33.6
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 4.4e-09 65.5 160 31.2
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 4.4e-09 65.5 121 32.2
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 4.4e-09 65.5 137 32.8
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 7.5e-09 64.7 119 36.1
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 7.5e-09 64.7 127 35.4
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 9.8e-09 64.3 109 33.0
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.8e-09 64.3 133 31.6
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 9.8e-09 64.3 120 38.3
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.3e-08 63.9 142 33.8
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.3e-08 63.9 142 33.8
Lj4g0026828 Lotus japonicus HOM05D002255 ORTHO05D002288 1.7e-08 63.5 135 31.1
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 2.9e-08 62.8 135 33.3
PSO266G0041 Papaver somniferum HOM05D002916 ORTHO05D003152 2.9e-08 62.8 121 29.8
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 4.9e-08 62.0 127 32.3
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 6.4e-08 61.6 145 30.3
SalBow6G0378 Salvia bowleyana HOM05D002916 ORTHO05D003152 6.4e-08 61.6 105 40.0
ATR0602G273 Amborella trichopoda HOM05D026466 ORTHO05D003152 8.3e-08 61.2 162 30.9
Glyma.08G024400 Glycine max HOM05D002255 ORTHO05D002288 8.3e-08 61.2 149 32.9
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 1.1e-07 60.8 136 30.9
CDE12G0661 Ceratophyllum demersum HOM05D002916 ORTHO05D003152 1.4e-07 60.5 132 32.6
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 1.4e-07 60.5 138 34.8
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 1.4e-07 60.5 136 33.1
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.9e-07 60.1 137 30.7
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 1.9e-07 60.1 137 31.4
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 2.4e-07 59.7 122 33.6
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.2e-07 59.3 143 32.2
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.2e-07 59.3 117 35.0
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 3.2e-07 59.3 117 35.0
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 3.2e-07 59.3 118 31.4
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 3.2e-07 59.3 142 32.4
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 3.2e-07 59.3 158 27.8
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 3.2e-07 59.3 118 36.4
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 4.1e-07 58.9 122 32.8
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 4.1e-07 58.9 142 31.7
Medtr3g092470 Medicago truncatula HOM05D002916 ORTHO05D003152 4.1e-07 58.9 146 35.6
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 5.4e-07 58.5 140 31.4
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 5.4e-07 58.5 137 35.0
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 7.1e-07 58.2 141 30.5
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 7.1e-07 58.2 135 32.6
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 7.1e-07 58.2 169 30.8
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 9.2e-07 57.8 122 30.3
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 9.2e-07 57.8 122 30.3
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 9.2e-07 57.8 129 31.8
Glyma.05G218300 Glycine max HOM05D002255 ORTHO05D002288 9.2e-07 57.8 149 28.9
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.2e-07 57.8 116 31.9
Nn3g18858 Nelumbo nucifera HOM05D002255 ORTHO05D002288 9.2e-07 57.8 161 30.4
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.2e-06 57.4 137 31.4
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.2e-06 57.4 137 31.4
Lalb_Chr05g0224011 Lupinus albus HOM05D002255 ORTHO05D002288 1.2e-06 57.4 136 28.7
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 1.2e-06 57.4 131 33.6
SEGI_25160 Sequoiadendron giganteum HOM05D002255 ORTHO05D002288 1.2e-06 57.4 156 29.5
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 1.6e-06 57.0 122 32.0
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 1.6e-06 57.0 122 32.0
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 1.6e-06 57.0 115 33.9
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.6e-06 57.0 117 33.3
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 1.6e-06 57.0 142 32.4
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 1.6e-06 57.0 142 32.4
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 2.1e-06 56.6 127 29.1
Haze_09094 Corylus avellana HOM05D002255 ORTHO05D002288 2.1e-06 56.6 148 29.7
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 2.1e-06 56.6 135 32.6
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.1e-06 56.6 116 31.9
Lalb_Chr11g0067321 Lupinus albus HOM05D002916 ORTHO05D003152 2.1e-06 56.6 162 29.0
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 2.1e-06 56.6 113 35.4
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 2.7e-06 56.2 134 29.1
Mapoly0171s0007 Marchantia polymorpha HOM05D018206 ORTHO05D013164 2.7e-06 56.2 161 29.2
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 3.5e-06 55.8 146 27.4
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 3.5e-06 55.8 137 32.1
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 4.6e-06 55.5 122 31.1
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 6.0e-06 55.1 132 28.8
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 7.8e-06 54.7 123 30.1


User provided reference genes

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