Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.0e-77 290.4 135 100.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.1e-69 264.6 136 90.4
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 7.8e-52 207.2 129 72.9
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.3e-51 206.5 122 73.0
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.3e-42 174.9 127 62.2
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.3e-42 174.1 127 61.4
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.2e-41 173.3 132 58.3
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 3.6e-41 171.8 123 63.4
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.8e-40 169.5 131 60.3
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.4e-39 165.2 128 61.7
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 3.4e-39 165.2 123 60.2
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.4e-39 164.9 130 60.8
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 9.9e-39 163.7 131 60.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 9.9e-39 163.7 127 59.8
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.7e-38 162.9 129 60.5
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 2.9e-38 162.2 130 56.9
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 2.9e-38 162.2 130 58.5
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.8e-38 161.8 123 60.2
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 6.4e-38 161.0 132 57.6
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 6.4e-38 161.0 123 58.5
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 8.4e-38 160.6 120 60.8
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 1.1e-37 160.2 130 57.7
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.1e-37 160.2 123 60.2
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.9e-37 159.5 129 57.4
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.9e-37 159.5 120 60.8
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.4e-37 159.1 130 55.4
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.4e-37 159.1 130 55.4
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.4e-37 159.1 123 58.5
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 2.4e-37 159.1 125 60.0
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 3.2e-37 158.7 132 59.8
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 3.2e-37 158.7 130 57.7
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 3.2e-37 158.7 124 57.3
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 3.2e-37 158.7 132 59.8
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 4.1e-37 158.3 132 56.1
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 4.1e-37 158.3 132 56.1
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 4.1e-37 158.3 132 59.1
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 5.4e-37 157.9 130 56.2
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 5.4e-37 157.9 132 59.1
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 5.4e-37 157.9 132 59.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 5.4e-37 157.9 131 58.0
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 7.1e-37 157.5 132 58.3
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.1e-37 157.5 123 57.7
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 7.1e-37 157.5 121 58.7
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 7.1e-37 157.5 135 57.8
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 7.1e-37 157.5 125 58.4
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 9.2e-37 157.1 122 56.6
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 9.2e-37 157.1 130 55.4
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 9.2e-37 157.1 132 56.8
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 9.2e-37 157.1 123 57.7
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 9.2e-37 157.1 122 57.4
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.2e-36 156.8 122 57.4
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.2e-36 156.8 127 59.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.2e-36 156.8 132 56.8
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.2e-36 156.8 131 55.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.6e-36 156.4 122 56.6
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.6e-36 156.4 123 60.2
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.6e-36 156.4 120 60.0
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.6e-36 156.4 132 59.1
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.6e-36 156.4 122 56.6
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 2.1e-36 156.0 130 55.4
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.1e-36 156.0 132 56.8
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.1e-36 156.0 124 56.5
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-36 156.0 120 60.0
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 2.1e-36 156.0 132 55.3
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 2.7e-36 155.6 128 60.9
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.5e-36 155.2 126 54.8
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.5e-36 155.2 124 58.1
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.5e-36 155.2 128 59.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.5e-36 155.2 120 59.2
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 4.6e-36 154.8 121 56.2
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 6.0e-36 154.5 123 57.7
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 6.0e-36 154.5 132 57.6
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 7.8e-36 154.1 130 55.4
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.0e-35 153.7 130 56.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.0e-35 153.7 125 55.2
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.0e-35 153.7 130 57.7
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.3e-35 153.3 121 58.7
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.3e-35 153.3 131 55.0
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 1.3e-35 153.3 132 56.8
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-35 153.3 122 54.9
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-35 152.9 120 58.3
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.3e-35 152.5 122 54.1
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 2.3e-35 152.5 122 54.9
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 2.3e-35 152.5 123 56.1
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.0e-35 152.1 124 57.3
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.0e-35 152.1 120 55.8
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 3.0e-35 152.1 123 60.2
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 3.0e-35 152.1 122 54.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 3.0e-35 152.1 123 57.7
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 3.9e-35 151.8 122 54.1
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.9e-35 151.8 120 59.2
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 3.9e-35 151.8 122 54.9
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 5.1e-35 151.4 122 55.7
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 5.1e-35 151.4 126 51.6
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.1e-35 151.4 126 51.6
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 8.6e-35 150.6 122 54.9
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 8.6e-35 150.6 130 55.4
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 8.6e-35 150.6 122 54.1
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.1e-34 150.2 122 57.4
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.1e-34 150.2 128 57.0
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-34 150.2 121 57.9
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 2.5e-34 149.1 124 56.5
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.5e-34 149.1 132 56.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 4.3e-34 148.3 124 54.0
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 4.3e-34 148.3 121 53.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 4.3e-34 148.3 121 55.4
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 5.6e-34 147.9 122 56.6
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 9.6e-34 147.1 131 57.3
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.2e-33 146.7 120 55.8
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.6e-33 146.4 110 62.7
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 2.8e-33 145.6 116 56.9
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 2.8e-33 145.6 122 54.9
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 2.8e-33 145.6 116 56.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.6e-33 145.2 122 52.5
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 3.6e-33 145.2 128 55.5
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.7e-33 144.8 119 58.8
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 6.2e-33 144.4 132 53.8
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 6.2e-33 144.4 122 57.4
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 8.1e-33 144.1 120 55.8
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.1e-32 143.7 124 52.4
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.1e-32 143.7 122 54.9
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.1e-32 143.7 168 46.4
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.8e-32 142.9 122 51.6
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.4e-32 142.5 122 55.7
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 6.9e-32 141.0 118 53.4
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 8.9e-32 140.6 117 56.4
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 7.6e-31 137.5 121 53.7
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 2.4e-29 132.5 119 48.7
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.4e-29 132.5 126 48.4
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.4e-29 132.5 119 52.1
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.4e-29 132.5 116 54.3
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 2.7e-28 129.0 107 54.2
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.3e-27 125.9 119 51.3
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.9e-26 122.9 104 57.7
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.8e-25 118.2 121 47.9
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.1e-24 117.1 115 47.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-21 107.1 121 47.9
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.1e-21 107.1 94 58.5
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 9.3e-21 104.0 86 58.1
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 9.3e-21 104.0 133 38.3
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 2.7e-20 102.4 86 57.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 3.5e-20 102.1 115 48.7
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.5e-20 102.1 71 67.6
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 4.3e-18 95.1 85 52.9
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 2.4e-16 89.4 74 62.2
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-15 87.0 64 56.2
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-11 73.6 110 37.3
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.0e-11 72.4 63 58.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 4.3e-10 68.6 78 44.9
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-08 63.5 77 42.9


User provided reference genes

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