Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035569 Chenopodium quinoa HOM05D006088 ORTHO05D007281 1.0e-287 992.6 495 100.0
AUR62006059 Chenopodium quinoa HOM05D006088 ORTHO05D007281 9.6e-257 889.8 523 86.6
EL10Ac3g05241 Beta vulgaris HOM05D006088 ORTHO05D007281 2.8e-224 781.9 541 74.1
Hund21022 Selenicereus undatus HOM05D006088 ORTHO05D007281 2.0e-182 642.9 552 61.6
Dinv29251 Davidia involucrata HOM05D006088 ORTHO05D007281 3.2e-180 635.6 541 62.1
Sc25g0000960 Simmondsia chinensis HOM05D006088 ORTHO05D007281 2.7e-174 615.9 531 61.6
Rhsim03G0211500 Rhododendron simsii HOM05D006088 ORTHO05D007281 1.5e-169 600.1 530 60.6
QL09p007776 Quercus lobata HOM05D006088 ORTHO05D007281 1.3e-168 597.0 541 59.5
Actinidia34240 Actinidia chinensis HOM05D006088 ORTHO05D007281 1.1e-167 594.0 541 58.8
Potri.015G009500 Populus trichocarpa HOM05D006088 ORTHO05D007281 1.6e-166 590.1 536 58.2
Lj1A1022T49 Lonicera japonica HOM05D006088 ORTHO05D007281 1.0e-165 587.4 539 57.5
Sabra15G0007500 Salix brachista HOM05D006088 ORTHO05D007281 6.6e-165 584.7 542 57.2
Lalb_Chr04g0253281 Lupinus albus HOM05D006088 ORTHO05D007281 7.3e-164 581.3 540 58.5
GSVIVG01038590001 Vitis vinifera HOM05D006088 ORTHO05D007281 2.8e-163 579.3 544 58.1
Prupe.2G314700 Prunus persica HOM05D006088 ORTHO05D007281 6.2e-163 578.2 541 57.9
vmacro06404 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 1.4e-162 577.0 574 55.6
TPR.G24535 Trifolium pratense HOM05D006088 ORTHO05D007281 1.8e-162 576.6 543 58.4
CSS0044490 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 1.5e-161 573.5 537 57.4
TAR629G2736 Trochodendron aralioides HOM05D006088 ORTHO05D007281 1.5e-161 573.5 542 56.5
PSO063G3091 Papaver somniferum HOM05D006088 ORTHO05D007281 4.4e-161 572.0 533 57.4
Nn1g00333 Nelumbo nucifera HOM05D006088 ORTHO05D007281 5.8e-161 571.6 541 56.6
Lj5g0026434 Lotus japonicus HOM05D006088 ORTHO05D007281 1.3e-160 570.5 541 57.1
Atru.chr12.2268 Acer truncatum HOM05D006088 ORTHO05D007281 2.2e-160 569.7 535 57.6
MD07G1295100 Malus domestica HOM05D006088 ORTHO05D007281 2.9e-160 569.3 540 57.0
Ca_12770_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 3.7e-160 568.9 541 56.0
FAN03G2371 Fragaria x ananassa HOM05D006088 ORTHO05D007281 3.7e-160 568.9 541 57.7
FAN03G2860 Fragaria x ananassa HOM05D006088 ORTHO05D007281 3.7e-160 568.9 541 57.7
FvH4_7g32160 Fragaria vesca HOM05D006088 ORTHO05D007281 6.4e-160 568.2 541 57.5
Atru.chr12.2276 Acer truncatum HOM05D006088 ORTHO05D007281 8.3e-160 567.8 535 57.2
FAN01G2391 Fragaria x ananassa HOM05D006088 ORTHO05D007281 1.9e-159 566.6 541 57.3
FAN10G3559 Fragaria x ananassa HOM05D006088 ORTHO05D007281 1.9e-159 566.6 541 57.1
RcHm_v2.0_Chr1g0381781 Rosa chinensis HOM05D006088 ORTHO05D007281 4.1e-159 565.5 539 56.6
Eucgr.A01442 Eucalyptus grandis HOM05D006088 ORTHO05D007281 9.2e-159 564.3 532 57.9
FAN10G3213 Fragaria x ananassa HOM05D006088 ORTHO05D007281 9.2e-159 564.3 541 56.9
Hma1.2p1_0707F.1_g207070 Hydrangea macrophylla HOM05D006088 ORTHO05D007281 1.6e-158 563.5 521 59.1
FAN06G1538 Fragaria x ananassa HOM05D006088 ORTHO05D007281 3.5e-158 562.4 541 57.3
Nitab4.5_0002780g0060 Nicotiana tabacum HOM05D006088 ORTHO05D007281 3.5e-158 562.4 492 61.6
Duzib068G0049 Durio zibethinus HOM05D006088 ORTHO05D007281 3.9e-157 558.9 531 56.9
PGR042G2967 Punica granatum HOM05D006088 ORTHO05D007281 3.9e-157 558.9 532 56.6
Sopen03g022590 Solanum pennellii HOM05D006088 ORTHO05D007281 3.9e-157 558.9 531 57.1
CANSAT21G0843 Cannabis sativa HOM05D006088 ORTHO05D007281 6.6e-157 558.1 540 56.7
Oeu037044.1 Olea europaea HOM05D006088 ORTHO05D007281 1.9e-156 556.6 541 55.8
PGSC0003DMG400018542 Solanum tuberosum HOM05D006088 ORTHO05D007281 4.3e-156 555.4 531 57.1
Glyma.13G078800 Glycine max HOM05D006088 ORTHO05D007281 7.3e-156 554.7 532 56.6
TWI39G0339 Tripterygium wilfordii HOM05D006088 ORTHO05D007281 1.6e-155 553.5 533 55.9
MSTRG.27009 Avicennia marina HOM05D006088 ORTHO05D007281 2.1e-155 553.1 536 55.0
Thecc.03G202800 Theobroma cacao HOM05D006088 ORTHO05D007281 6.2e-155 551.6 532 56.4
CsaV3_3G019690 Cucumis sativus L. HOM05D006088 ORTHO05D007281 1.8e-154 550.1 536 56.2
MELO3C019378.2 Cucumis melo HOM05D006088 ORTHO05D007281 4.0e-154 548.9 535 56.3
Phvul.001G074500 Phaseolus vulgaris HOM05D006088 ORTHO05D007281 1.5e-153 547.0 531 55.9
CSS0005298 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 2.0e-153 546.6 516 57.2
Gohir.A09G186501 Gossypium hirsutum HOM05D006088 ORTHO05D007281 1.7e-152 543.5 531 56.3
CAN.G481.44 Capsicum annuum HOM05D006088 ORTHO05D007281 2.2e-152 543.1 541 55.8
SGA_v2.0_scaffold44G16827 Striga asiatica HOM05D006088 ORTHO05D007281 1.9e-151 540.0 530 55.7
COL.COLO4_16809 Corchorus olitorius HOM05D006088 ORTHO05D007281 9.2e-151 537.7 531 55.4
Sed0011789 Sechium edule HOM05D006088 ORTHO05D007281 1.6e-150 537.0 539 55.5
HanXRQChr04g0100451 Helianthus annuus HOM05D006088 ORTHO05D007281 2.7e-150 536.2 528 55.1
Gohir.D09G180600 Gossypium hirsutum HOM05D006088 ORTHO05D007281 4.6e-150 535.4 528 55.9
DCAR_014551 Daucus carota HOM05D006088 ORTHO05D007281 2.3e-149 533.1 527 55.4
arahy.Tifrunner.gnm1.ann1.F1TPPK Arachis hypogaea HOM05D006088 ORTHO05D007281 6.6e-149 531.6 555 53.5
Psat6g035960 Pisum sativum HOM05D006088 ORTHO05D007281 1.1e-148 530.8 523 56.4
Peaxi162Scf00740g00327 Petunia axillaris HOM05D006088 ORTHO05D007281 1.5e-148 530.4 521 56.0
Aqoxy5G04265 Aquilegia oxysepala HOM05D006088 ORTHO05D007281 7.3e-148 528.1 542 52.8
arahy.Tifrunner.gnm1.ann1.W8KES2 Arachis hypogaea HOM05D006088 ORTHO05D007281 2.8e-147 526.2 543 53.0
Solyc03g082850.3 Solanum lycopersicum HOM05D006088 ORTHO05D007281 4.7e-147 525.4 519 55.5
THA.LOC104814937 Tarenaya hassleriana HOM05D006088 ORTHO05D007281 1.2e-145 520.8 533 53.3
Thhalv10004042m.g Eutrema salsugineum HOM05D006088 ORTHO05D007281 6.4e-144 515.0 531 53.7
Sp2g22980 Schrenkiella parvula HOM05D006088 ORTHO05D007281 8.4e-144 514.6 533 52.5
MBI12_g21748_MAGBIO Magnolia biondii HOM05D006088 ORTHO05D007281 1.2e-142 510.8 514 54.1
unitig_52.g17713 Utricularia gibba HOM05D006088 ORTHO05D007281 1.2e-142 510.8 498 55.8
Migut.F00188 Erythranthe guttata HOM05D006088 ORTHO05D007281 1.6e-142 510.4 511 53.8
Aa31LG11G3620 Aethionema arabicum HOM05D006088 ORTHO05D007281 2.1e-142 510.0 532 53.0
BcaB07g29905 Brassica carinata HOM05D006088 ORTHO05D007281 4.6e-142 508.8 534 52.2
BcaC03g17984 Brassica carinata HOM05D006088 ORTHO05D007281 6.0e-142 508.4 533 52.0
BcaC03g17985 Brassica carinata HOM05D006088 ORTHO05D007281 7.8e-142 508.1 532 52.1
CARHR189110 Cardamine hirsuta HOM05D006088 ORTHO05D007281 1.0e-141 507.7 535 52.0
AT5G24340 Arabidopsis thaliana HOM05D006088 ORTHO05D007281 3.0e-141 506.1 534 52.4
A02p40650 Brassica napus HOM05D006088 ORTHO05D007281 3.9e-141 505.8 534 51.9
Carub.0006s2216 Capsella rubella HOM05D006088 ORTHO05D007281 3.9e-141 505.8 533 52.0
Cpa.g.sc3.114 Carica papaya HOM05D006088 ORTHO05D007281 8.6e-141 504.6 506 55.3
vmacro06403 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 1.5e-140 503.8 524 54.4
BolC2t12093H Brassica oleracea HOM05D006088 ORTHO05D007281 2.5e-140 503.1 533 51.4
BraA02t09012Z Brassica rapa HOM05D006088 ORTHO05D007281 2.5e-140 503.1 534 51.5
Cc02_g01220 Coffea canephora HOM05D006088 ORTHO05D007281 3.3e-140 502.7 510 54.7
Gorai.006G202600 Gossypium raimondii HOM05D006088 ORTHO05D007281 1.2e-139 500.7 508 55.3
ECA238G4490 Erigeron canadensis HOM05D006088 ORTHO05D007281 1.5e-137 493.8 548 51.3
Nitab4.5_0005326g0020 Nicotiana tabacum HOM05D006088 ORTHO05D007281 2.9e-136 489.6 539 52.9
C02p60380 Brassica napus HOM05D006088 ORTHO05D007281 4.0e-130 469.2 513 50.7
HPP92_025612 Vanilla planifolia HOM05D006088 ORTHO05D007281 2.4e-127 459.9 535 46.9
BcaC03g17987 Brassica carinata HOM05D006088 ORTHO05D007281 4.2e-127 459.1 542 48.7
Lsat_1_v5_gn_2_135240 Lactuca sativa HOM05D006088 ORTHO05D007281 7.1e-127 458.4 534 51.3
ATR0757G203 Amborella trichopoda HOM05D006088 ORTHO05D007281 3.5e-118 429.5 538 46.1
Glyma.14G150400 Glycine max HOM05D006088 ORTHO05D007281 3.9e-117 426.0 330 64.5
Manes.01G039200 Manihot esculenta HOM05D006088 ORTHO05D007281 4.8e-115 419.1 463 52.1
Os07g0452400 Oryza sativa ssp. japonica HOM05D006088 ORTHO05D007281 4.0e-114 416.0 541 46.4
Ciclev10020182m.g Citrus clementina HOM05D006088 ORTHO05D007281 6.9e-114 415.2 458 52.6
CDE02G1851 Ceratophyllum demersum HOM05D006088 ORTHO05D007281 1.3e-112 411.0 534 45.1
CiPaw.06G044500 Carya illinoinensis HOM05D006088 ORTHO05D007281 4.9e-112 409.1 455 51.4
SalBow4G2097 Salvia bowleyana HOM05D006088 ORTHO05D007281 1.2e-97 361.3 249 70.3
Hma1.2p1_0707F.1_g207060 Hydrangea macrophylla HOM05D006088 ORTHO05D007281 1.7e-96 357.5 415 50.4
Zm00001eb096690 Zea mays HOM05D006088 ORTHO05D007281 8.5e-96 355.1 348 54.0
Ca_12778_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 9.1e-90 335.1 408 47.1
Haze_00251 Corylus avellana HOM05D006088 ORTHO05D007281 2.2e-83 313.9 453 43.3
Haze_00245 Corylus avellana HOM05D006088 ORTHO05D007281 7.0e-82 308.9 453 42.8
AL6G35860 Arabidopsis lyrata HOM05D006088 ORTHO05D007281 9.1e-82 308.5 419 44.2
Mapoly0133s0016 Marchantia polymorpha HOM05D006088 ORTHO05D007281 2.0e-73 280.8 634 32.3
SMO266G0077 Selaginella moellendorffii HOM05D006088 ORTHO05D007281 5.0e-72 276.2 505 36.2
DCAR_010586 Daucus carota HOM05D006088 ORTHO05D007281 2.5e-71 273.9 236 58.5
AagrBONN_evm.TU.Sc2ySwM_117.2926 Anthoceros agrestis HOM05D006088 ORTHO05D007281 7.2e-71 272.3 466 35.6
arahy.Tifrunner.gnm1.ann1.IYG6N7 Arachis hypogaea HOM05D006088 ORTHO05D007281 8.0e-70 268.9 277 56.7
A02p40390 Brassica napus HOM05D006088 ORTHO05D007281 1.4e-66 258.1 235 57.9
Pp3c11_25950 Physcomitrium patens HOM05D006088 ORTHO05D007281 1.3e-64 251.5 473 33.8
arahy.Tifrunner.gnm1.ann1.GS5K3D Arachis hypogaea HOM05D006088 ORTHO05D007281 6.4e-51 206.1 216 55.6
VMungo0647G0665 Vigna mungo HOM05D006088 ORTHO05D007281 2.3e-40 171.0 89 82.0
PSO675G7769 Papaver somniferum HOM05D006088 ORTHO05D007281 5.8e-36 156.4 251 41.8
CBR_g51519 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-35 154.8 249 37.3
PSO732G0342 Papaver somniferum HOM05D006088 ORTHO05D007281 1.7e-35 154.8 356 36.0
Cfa016204 Carpinus fangiana HOM05D006088 ORTHO05D007281 4.3e-31 140.2 150 52.0
Cc11_g07360 Coffea canephora HOM05D006088 ORTHO05D007281 1.1e-26 125.6 127 55.1
A02p40610 Brassica napus HOM05D006088 ORTHO05D007281 5.4e-26 123.2 151 49.0
Dinv35357 Davidia involucrata HOM05D006088 ORTHO05D007281 3.5e-25 120.6 61 83.6
A02p40510 Brassica napus HOM05D006088 ORTHO05D007281 1.0e-24 119.0 151 48.3
Cc00_g34690 Coffea canephora HOM05D006088 ORTHO05D007281 1.4e-18 98.6 89 60.7
CDE11G0933 Ceratophyllum demersum HOM05D006088 ORTHO05D007281 7.1e-18 96.3 74 62.2
A02p40350 Brassica napus HOM05D006088 ORTHO05D007281 5.8e-12 76.6 60 70.0
BraA02t09007Z Brassica rapa HOM05D006088 ORTHO05D007281 5.8e-12 76.6 104 41.3
TWI14G0770 Tripterygium wilfordii HOM05D006088 ORTHO05D007281 5.8e-12 76.6 70 60.0
Lsat_1_v5_gn_7_72820 Lactuca sativa HOM05D006088 ORTHO05D007281 7.6e-12 76.3 92 45.7
SEGI_18369 Sequoiadendron giganteum HOM05D006088 ORTHO05D007281 1.9e-10 71.6 181 28.7
Cre02.g083900 Chlamydomonas reinhardtii HOM05D005361 ORTHO05D006518 3.2e-10 70.9 157 31.2
A02p40600 Brassica napus HOM05D006088 ORTHO05D007281 5.4e-10 70.1 35 74.3
MCO02G089 Micromonas commoda HOM05D005361 ORTHO05D006518 5.4e-10 70.1 165 31.5
HanXRQChr01g0020021 Helianthus annuus HOM05D001036 ORTHO05D001852 2.8e-06 57.8 79 38.0
Mapoly0054s0112 Marchantia polymorpha HOM05D005361 ORTHO05D006518 8.1e-06 56.2 215 26.5


User provided reference genes

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