Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 2.2e-282 974.9 486 100.0
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.0e-247 859.8 482 90.0
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 9.5e-217 756.9 485 77.5
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 1.7e-197 693.0 514 70.0
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 2.7e-179 632.5 469 67.0
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 3.5e-171 605.5 471 64.5
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 3.9e-170 602.1 506 61.5
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 2.8e-168 595.9 471 64.5
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 1.8e-167 593.2 470 64.0
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 2.0e-166 589.7 517 61.1
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 4.9e-165 585.1 517 60.7
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 3.2e-164 582.4 472 61.4
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 5.5e-164 581.6 392 72.7
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.2e-163 580.5 486 60.7
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 1.6e-163 580.1 465 62.2
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.6e-163 580.1 444 65.3
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 6.0e-163 578.2 476 62.4
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 3.0e-162 575.9 455 64.6
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 3.3e-161 572.4 454 63.7
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 6.3e-160 568.2 450 62.9
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 4.1e-159 565.5 450 63.1
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 4.1e-159 565.5 447 63.1
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 1.5e-158 563.5 444 65.1
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 2.6e-158 562.8 466 60.1
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 5.9e-158 561.6 507 59.0
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 5.9e-158 561.6 476 60.1
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 7.6e-158 561.2 472 62.7
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 7.6e-158 561.2 449 63.0
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.0e-157 560.8 449 61.5
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 3.8e-157 558.9 513 57.5
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 5.0e-157 558.5 490 58.2
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 6.5e-157 558.1 447 62.0
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 1.1e-156 557.4 447 62.0
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 1.1e-156 557.4 445 62.9
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.9e-156 556.6 449 61.0
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 3.2e-156 555.8 451 63.6
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 5.5e-156 555.1 501 58.1
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.2e-156 554.7 472 59.1
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 7.9e-155 551.2 462 62.8
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 1.3e-154 550.4 441 62.8
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 3.9e-154 548.9 459 61.0
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.9e-153 546.6 438 61.9
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 1.9e-153 546.6 456 61.2
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 2.5e-153 546.2 465 60.2
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 9.7e-153 544.3 472 58.3
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 1.3e-152 543.9 458 60.7
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 1.6e-152 543.5 481 58.4
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 6.3e-152 541.6 455 60.2
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.1e-151 540.8 472 57.8
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 3.1e-151 539.3 475 59.8
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 5.3e-151 538.5 465 59.8
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 9.1e-151 537.7 461 57.9
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 2.0e-150 536.6 478 59.0
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 4.5e-150 535.4 454 60.4
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 2.2e-149 533.1 458 60.5
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.9e-149 532.7 454 59.9
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 3.8e-149 532.3 445 61.3
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 5.0e-149 531.9 447 61.1
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 3.2e-148 529.3 460 60.2
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 7.2e-148 528.1 484 57.0
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 7.9e-147 524.6 448 59.8
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 1.4e-146 523.9 436 61.2
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 2.3e-146 523.1 436 60.8
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.9e-146 522.3 449 59.0
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 1.1e-145 520.8 416 63.5
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.1e-145 520.8 466 58.2
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.0e-145 520.0 409 62.6
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 2.6e-145 519.6 465 57.6
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 1.7e-144 516.9 437 60.0
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.2e-144 516.5 409 62.1
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 4.8e-144 515.4 450 59.3
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.1e-143 512.7 471 56.1
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.2e-142 510.8 352 70.7
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 3.4e-142 509.2 480 55.8
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 4.5e-142 508.8 425 58.4
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.2e-141 506.5 472 55.5
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 5.5e-140 501.9 460 57.6
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 6.1e-139 498.4 462 56.3
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 1.1e-137 494.2 488 55.1
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 8.2e-136 488.0 409 60.4
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 2.4e-135 486.5 463 56.2
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 3.1e-135 486.1 492 54.7
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 3.1e-135 486.1 487 54.2
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.6e-134 483.8 462 55.8
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 5.9e-134 481.9 462 56.1
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 1.3e-133 480.7 462 55.8
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 1.5e-132 477.2 483 53.8
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.4e-130 470.7 452 58.2
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 4.0e-130 469.2 476 54.8
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 4.0e-130 469.2 420 58.8
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 1.5e-129 467.2 483 53.0
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.1e-127 461.1 341 66.0
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.6e-126 457.2 415 56.9
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.0e-122 444.5 477 50.9
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 5.7e-121 438.7 403 56.1
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 8.6e-109 398.3 421 51.5
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 4.3e-108 396.0 340 59.7
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 9.5e-108 394.8 408 50.5
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 4.7e-107 392.5 430 50.7
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 4.7e-107 392.5 421 52.3
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 5.7e-105 385.6 395 53.9
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 9.2e-103 378.3 404 51.7
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 1.2e-94 351.3 321 57.9
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.3e-77 293.9 215 66.0
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 9.0e-74 282.0 400 42.0
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.9e-68 264.2 338 48.5
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.4e-63 246.1 185 64.3
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.3e-56 224.9 220 54.5
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 8.2e-43 179.1 213 47.4
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 4.1e-42 176.8 315 33.3
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 2.4e-26 124.4 106 55.7
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.3e-26 123.2 153 46.4
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 1.9e-23 114.8 143 46.2
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 6.1e-22 109.8 239 30.1
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 1.3e-19 102.1 89 58.4
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 3.2e-15 87.4 205 28.8
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 3.2e-15 87.4 205 28.8
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 1.2e-12 79.0 319 21.3
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 5.3e-10 70.1 106 44.3
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 3.8e-08 63.9 90 42.2
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 4.2e-07 60.5 121 26.4
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 5.5e-07 60.1 124 26.6
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 9.4e-07 59.3 124 26.6
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 9.4e-07 59.3 124 26.6
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 9.4e-07 59.3 141 24.1
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 2.1e-06 58.2 128 24.2
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 2.1e-06 58.2 128 24.2
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 6.1e-06 56.6 101 28.7


User provided reference genes

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