Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 4.9e-64 247.7 126 100.0
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.4e-58 229.6 126 92.9
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.7e-57 224.2 126 93.7
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.7e-56 222.6 126 89.7
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.4e-49 198.4 124 79.0
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.0e-45 186.8 124 73.4
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.0e-45 186.8 124 73.4
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.1e-43 179.1 124 79.0
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.8e-43 178.7 124 79.0
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 2.8e-43 178.7 126 79.4
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.3e-42 175.6 122 77.9
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 3.1e-42 175.3 131 73.3
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.1e-42 175.3 131 75.6
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 4.0e-42 174.9 124 75.0
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 5.2e-42 174.5 132 72.0
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 5.2e-42 174.5 127 72.4
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 5.2e-42 174.5 131 73.3
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 5.2e-42 174.5 126 76.2
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 6.8e-42 174.1 131 72.5
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 6.8e-42 174.1 129 74.4
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 6.8e-42 174.1 102 86.3
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.2e-41 173.3 130 74.6
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 2.0e-41 172.6 128 75.0
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 2.6e-41 172.2 129 75.2
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 2.6e-41 172.2 125 73.6
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 3.4e-41 171.8 129 73.6
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 4.4e-41 171.4 126 72.2
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 4.4e-41 171.4 126 72.2
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.8e-41 171.0 131 71.8
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 5.8e-41 171.0 128 74.2
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 7.5e-41 170.6 128 75.0
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 9.8e-41 170.2 131 73.3
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.3e-40 169.9 131 72.5
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 125 72.8
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.3e-40 169.9 128 74.2
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.3e-40 169.9 127 73.2
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.7e-40 169.5 125 72.0
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.7e-40 169.5 124 76.6
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.7e-40 169.5 124 73.4
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.7e-40 169.5 124 73.4
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.7e-40 169.5 128 71.1
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 2.2e-40 169.1 132 69.7
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 2.2e-40 169.1 124 74.2
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.9e-40 168.7 133 71.4
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 2.9e-40 168.7 123 77.2
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 2.9e-40 168.7 131 67.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.9e-40 168.7 131 71.0
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.7e-40 168.3 135 71.9
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 3.7e-40 168.3 129 68.2
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 4.9e-40 167.9 133 72.2
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 6.4e-40 167.5 130 69.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 8.3e-40 167.2 127 70.9
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 8.3e-40 167.2 126 70.6
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 8.3e-40 167.2 126 70.6
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 8.3e-40 167.2 126 70.6
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 8.3e-40 167.2 126 70.6
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 8.3e-40 167.2 129 71.3
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.1e-39 166.8 120 74.2
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.4e-39 166.4 131 71.8
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.4e-39 166.4 135 71.1
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.4e-39 166.4 126 73.0
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.9e-39 166.0 131 70.2
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.9e-39 166.0 123 69.9
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.9e-39 166.0 123 69.9
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.9e-39 166.0 123 69.9
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.2e-39 165.2 127 72.4
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 4.1e-39 164.9 128 71.1
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 4.1e-39 164.9 126 72.2
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 4.1e-39 164.9 126 69.0
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 4.1e-39 164.9 123 72.4
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 5.4e-39 164.5 128 71.9
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 5.4e-39 164.5 128 72.7
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 5.4e-39 164.5 132 69.7
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 7.1e-39 164.1 133 69.2
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 7.1e-39 164.1 126 69.8
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 9.2e-39 163.7 119 73.9
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 9.2e-39 163.7 119 73.9
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 9.2e-39 163.7 119 73.9
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 9.2e-39 163.7 129 70.5
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 9.2e-39 163.7 129 70.5
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 9.2e-39 163.7 128 72.7
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.2e-38 163.3 128 71.1
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.2e-38 163.3 127 73.2
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.2e-38 163.3 127 73.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.2e-38 163.3 124 70.2
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.2e-38 163.3 130 69.2
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-38 162.9 131 71.8
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.6e-38 162.9 126 68.3
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 2.1e-38 162.5 125 70.4
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 2.1e-38 162.5 127 73.2
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.1e-38 162.5 131 69.5
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.7e-38 162.2 127 70.1
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.7e-38 162.2 101 80.2
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.5e-38 161.8 97 82.5
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.5e-38 161.8 126 69.8
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.5e-38 161.8 125 68.8
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 7.8e-38 160.6 119 74.8
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.0e-37 160.2 129 69.8
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.0e-37 160.2 110 80.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.3e-37 159.8 131 67.9
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.3e-37 159.8 103 79.6
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.7e-37 159.5 126 69.0
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 2.3e-37 159.1 124 71.8
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.3e-37 159.1 125 67.2
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 3.9e-37 158.3 128 66.4
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.9e-37 158.3 131 67.9
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 5.1e-37 157.9 131 68.7
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.1e-37 157.9 131 67.2
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 5.1e-37 157.9 124 69.4
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 6.6e-37 157.5 111 72.1
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-36 156.8 127 71.7
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.5e-36 156.4 123 69.9
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.9e-36 156.0 126 65.9
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.9e-36 156.0 123 69.1
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.5e-36 155.6 121 69.4
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 2.5e-36 155.6 123 69.1
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 3.3e-36 155.2 97 80.4
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 3.3e-36 155.2 118 70.3
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 4.3e-36 154.8 125 68.0
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 5.6e-36 154.5 124 67.7
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.2e-35 153.3 103 78.6
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.2e-35 153.3 126 65.1
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 2.1e-35 152.5 123 67.5
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 6.2e-35 151.0 125 65.6
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 8.1e-35 150.6 112 70.5
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.4e-34 149.8 84 90.5
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 2.3e-34 149.1 125 64.8
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.6e-33 145.6 122 68.0
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 5.8e-33 144.4 111 72.1
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.9e-32 142.1 112 71.4
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 3.7e-32 141.7 117 67.5
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.2e-31 138.7 128 64.8
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.5e-30 135.2 130 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.0e-29 133.7 95 73.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.7e-29 132.9 83 79.5
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.3e-29 132.5 125 56.0
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 8.9e-26 120.6 124 57.3
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.4e-25 118.6 69 85.5
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.4e-25 118.6 124 56.5
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.2e-22 110.2 109 56.0
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 2.7e-22 109.0 127 51.2
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.3e-21 105.9 78 71.8
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 3.3e-20 102.1 119 56.3
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.6e-20 101.3 95 64.2
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 5.6e-20 101.3 56 85.7
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 2.8e-19 99.0 84 58.3
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.6e-19 98.6 95 61.1
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 8.1e-19 97.4 79 64.6
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.4e-18 96.7 71 73.2
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.0e-18 95.1 90 60.0
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.8e-17 91.3 89 60.7
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 7.6e-17 90.9 69 69.6
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 4.9e-16 88.2 104 48.1
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 2.3e-13 79.3 65 60.0
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.2e-06 57.0 33 75.8


User provided reference genes

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