Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 2.2e-174 615.5 309 100.0
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.9e-162 575.9 309 93.2
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 6.9e-112 407.9 247 78.1
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 9.0e-112 407.5 247 78.1
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 1.2e-111 407.1 247 78.1
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 3.8e-110 402.1 237 80.6
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 7.1e-109 397.9 246 78.5
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 9.3e-109 397.5 313 66.8
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 1.2e-108 397.1 251 74.9
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 1.6e-108 396.7 291 68.0
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 2.1e-108 396.4 227 83.3
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.7e-108 396.0 273 72.2
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 4.6e-108 395.2 286 68.5
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 1.0e-107 394.0 230 81.7
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 3.9e-107 392.1 247 76.5
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 3.9e-107 392.1 245 78.0
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 6.7e-107 391.3 295 68.5
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 6.7e-107 391.3 307 65.1
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 1.1e-106 390.6 289 68.5
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.9e-106 389.8 303 67.0
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 3.3e-106 389.0 316 63.9
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 7.4e-106 387.9 298 66.4
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 1.6e-105 386.7 302 65.9
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 2.1e-105 386.3 248 75.4
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 2.1e-105 386.3 233 77.7
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 2.8e-105 386.0 235 77.9
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 4.8e-105 385.2 251 73.7
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.1e-104 384.0 232 78.4
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 1.4e-104 383.6 233 79.0
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 1.4e-104 383.6 233 78.1
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 2.4e-104 382.9 248 74.2
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 3.1e-104 382.5 265 71.3
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 3.1e-104 382.5 282 68.1
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 5.3e-104 381.7 233 77.7
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 6.9e-104 381.3 247 71.7
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 6.9e-104 381.3 273 69.2
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 1.5e-103 380.2 308 64.9
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 2.0e-103 379.8 305 64.6
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 3.4e-103 379.0 257 70.4
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 5.8e-103 378.3 287 64.8
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 5.8e-103 378.3 228 78.9
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 5.8e-103 378.3 259 70.3
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 5.8e-103 378.3 246 75.6
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 5.8e-103 378.3 233 76.4
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 7.6e-103 377.9 257 70.8
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 1.0e-102 377.5 288 66.7
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.3e-102 377.1 254 70.5
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.3e-102 377.1 259 70.3
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 1.3e-102 377.1 249 74.7
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 2.2e-102 376.3 229 79.5
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 1.1e-101 374.0 233 74.7
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 1.9e-101 373.2 241 73.0
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 2.5e-101 372.9 261 69.0
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 2.5e-101 372.9 251 70.9
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 3.2e-101 372.5 257 70.4
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 4.2e-101 372.1 257 70.4
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 5.5e-101 371.7 257 70.0
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 7.1e-101 371.3 257 70.0
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 1.2e-100 370.5 282 65.2
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.2e-100 370.5 247 69.2
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 1.2e-100 370.5 236 74.6
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 1.2e-100 370.5 259 68.0
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 1.6e-100 370.2 289 64.7
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 2.1e-100 369.8 257 69.6
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 2.1e-100 369.8 229 76.0
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 6.0e-100 368.2 228 75.0
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 1.8e-99 366.7 258 68.6
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 3.0e-99 365.9 235 73.6
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 5.1e-99 365.2 243 72.0
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 5.1e-99 365.2 235 74.0
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 6.7e-99 364.8 235 74.0
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 8.7e-99 364.4 229 75.1
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 8.7e-99 364.4 235 73.2
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 9.6e-98 360.9 278 65.1
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 3.7e-97 359.0 247 68.0
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 6.2e-97 358.2 245 70.6
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 2.4e-96 356.3 266 66.5
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 4.1e-96 355.5 249 71.1
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 5.3e-96 355.1 253 66.4
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 5.8e-95 351.7 235 71.5
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 5.8e-95 351.7 233 70.4
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.8e-94 349.0 244 66.8
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 6.5e-94 348.2 235 71.5
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 8.4e-94 347.8 302 59.3
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 1.1e-93 347.4 233 69.1
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 4.2e-93 345.5 249 68.3
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 4.2e-93 345.5 247 65.6
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 4.2e-93 345.5 256 67.2
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 2.7e-92 342.8 297 63.0
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.3e-91 340.5 243 65.4
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 1.8e-91 340.1 292 61.0
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 2.5e-90 336.3 240 67.9
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.3e-89 334.0 240 64.6
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.7e-89 332.4 243 63.8
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 9.0e-88 327.8 228 67.1
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 3.4e-87 325.9 229 65.9
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 2.2e-86 323.2 235 65.1
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 2.9e-86 322.8 227 66.1
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 1.4e-85 320.5 251 65.3
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 3.2e-85 319.3 218 67.0
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 5.5e-85 318.5 218 66.1
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 9.4e-85 317.8 233 66.5
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 9.4e-85 317.8 238 62.2
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.1e-84 316.6 243 60.9
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 2.1e-84 316.6 229 65.5
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 1.0e-83 314.3 245 62.9
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 1.7e-81 307.0 162 90.1
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.2e-81 306.6 253 59.3
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.4e-80 303.9 223 69.1
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.1e-80 302.8 230 60.9
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 9.1e-80 301.2 304 56.9
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 2.5e-77 293.1 235 61.7
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 1.2e-76 290.8 218 65.6
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 8.8e-75 284.6 248 61.3
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.2e-71 274.2 246 57.3
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 5.9e-71 271.9 280 51.1
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 4.7e-68 262.3 185 64.9
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 8.0e-68 261.5 166 77.1
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 1.5e-66 257.3 176 68.8
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 3.7e-65 252.7 286 47.6
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 2.7e-63 246.5 268 53.4
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 5.0e-62 242.3 226 54.0
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 4.2e-61 239.2 245 55.9
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 2.3e-59 233.4 196 59.2
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 7.5e-58 228.4 240 54.2
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.8e-56 223.8 245 54.7
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 1.1e-53 214.5 140 70.0
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 4.7e-52 209.1 156 66.0
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 1.1e-48 198.0 120 71.7
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 1.9e-45 187.2 288 38.2
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 2.3e-43 180.3 239 45.2
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 8.3e-41 171.8 150 64.0
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 6.8e-35 152.1 114 63.2
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 3.7e-33 146.4 277 38.3
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.1e-32 144.8 102 70.6
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 6.0e-31 139.0 132 54.5
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 7.3e-29 132.1 100 64.0
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 4.0e-27 126.3 137 48.9
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 1.2e-23 114.8 72 75.0
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 1.1e-19 101.7 58 82.8
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.6e-15 87.8 94 52.1
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 3.0e-14 83.6 74 52.7
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 5.1e-14 82.8 73 61.6
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 1.4e-11 74.7 57 59.6
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.0e-11 73.2 53 67.9


User provided reference genes

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