Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035044 Chenopodium quinoa HOM05D007548 ORTHO05D009527 2.3e-168 595.5 310 100.0
AUR62016096 Chenopodium quinoa HOM05D007548 ORTHO05D009527 9.8e-159 563.5 310 94.8
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 1.3e-129 466.8 310 78.4
Ah.07g208330 Amaranthus hybridus HOM05D007548 ORTHO05D009527 2.2e-102 376.3 316 67.7
Ah.13g067520 Amaranthus hybridus HOM05D007548 ORTHO05D009527 4.1e-48 196.1 299 45.8
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 4.3e-37 159.5 323 38.7
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 8.9e-35 151.8 306 40.8
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 8.9e-35 151.8 293 41.6
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 1.2e-34 151.4 312 41.0
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 1.7e-33 147.5 287 40.4
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 3.7e-33 146.4 307 42.0
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 8.3e-33 145.2 289 39.1
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 2.7e-31 140.2 299 39.1
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 3.0e-30 136.7 274 42.3
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 3.9e-30 136.3 284 42.6
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 3.9e-30 136.3 302 41.1
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 4.7e-28 129.4 288 39.6
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 4.7e-28 129.4 299 38.8
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 1.8e-27 127.5 303 41.9
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.8e-27 127.5 303 41.9
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.8e-27 127.5 303 41.9
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 3.1e-27 126.7 304 40.1
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 5.2e-27 125.9 288 36.8
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 2.6e-26 123.6 280 42.1
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 4.4e-26 122.9 275 40.7
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 9.9e-26 121.7 321 38.0
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 9.9e-26 121.7 288 35.8
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 2.2e-25 120.6 290 40.7
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 3.8e-25 119.8 300 36.7
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 3.8e-25 119.8 294 35.4
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 4.9e-25 119.4 306 39.5
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 4.9e-25 119.4 297 38.0
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.1e-24 118.2 288 32.6
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 1.1e-24 118.2 303 37.6
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.9e-24 117.5 309 37.5
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 4.1e-24 116.3 306 36.6
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 4.1e-24 116.3 303 37.3
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 7.1e-24 115.5 278 37.4
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 1.2e-23 114.8 294 36.4
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 2.1e-23 114.0 278 41.4
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 3.5e-23 113.2 273 39.6
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 6.0e-23 112.5 280 40.4
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 1.3e-22 111.3 299 36.5
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 2.3e-22 110.5 297 38.7
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 3.9e-22 109.8 314 36.9
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 1.5e-21 107.8 298 31.2
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 7.3e-21 105.5 302 34.1
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 9.6e-21 105.1 289 37.7
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 6.2e-20 102.4 217 39.6
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 1.4e-19 101.3 275 36.0
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 2.4e-19 100.5 282 36.2
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 3.1e-19 100.1 319 31.3
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 4.0e-19 99.8 277 34.3
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 1.2e-18 98.2 323 35.0
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 2.6e-18 97.1 314 34.7
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 5.8e-18 95.9 322 35.1
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 9.9e-18 95.1 300 37.0
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 1.7e-17 94.4 349 31.2
SGA_v2.0_scaffold2G01130 Striga asiatica HOM05D007548 ORTHO05D009527 8.4e-17 92.0 277 35.4
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 5.4e-16 89.4 352 31.5
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 7.1e-16 89.0 128 46.1
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 9.3e-16 88.6 220 37.3
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 2.1e-15 87.4 290 34.5
PSO782G0883 Papaver somniferum HOM05D007548 ORTHO05D009527 2.7e-15 87.0 315 32.4
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 2.7e-15 87.0 140 43.6
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 3.5e-15 86.7 299 35.8
SGA_v2.0_scaffold486G52377 Striga asiatica HOM05D007548 ORTHO05D009527 3.5e-15 86.7 284 33.1
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 7.8e-15 85.5 347 31.4
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 2.3e-14 84.0 290 31.0
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 5.1e-14 82.8 339 32.2
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 6.6e-14 82.4 288 32.6
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 6.6e-14 82.4 287 32.4
unitig_37.g12505 Utricularia gibba HOM05D007548 ORTHO05D009527 8.7e-14 82.0 269 33.5
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 1.1e-13 81.6 327 32.1
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 4.3e-13 79.7 330 28.5
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 9.6e-13 78.6 350 30.0
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 2.8e-12 77.0 288 31.6
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 6.2e-12 75.9 320 32.5
arahy.Tifrunner.gnm1.ann1.1QTB59 Arachis hypogaea HOM05D007548 ORTHO05D009527 1.5e-10 71.2 122 41.8
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 4.5e-10 69.7 174 36.8
PSO478G0091 Papaver somniferum HOM05D007548 ORTHO05D009527 5.8e-10 69.3 271 30.6
ECA233G0652 Erigeron canadensis HOM05D007548 ORTHO05D009527 2.9e-09 67.0 312 30.4
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 7.1e-08 62.4 322 29.8
arahy.Tifrunner.gnm1.ann1.Z61DE3 Arachis hypogaea HOM05D007548 ORTHO05D009527 4.6e-07 59.7 120 36.7
Aqoxy7G00579 Aquilegia oxysepala HOM05D007548 ORTHO05D009527 1.0e-06 58.5 301 22.3
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 3.0e-06 57.0 321 29.0
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 3.0e-06 57.0 321 29.0
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 3.0e-06 57.0 321 29.0
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 6.7e-06 55.8 210 28.6


User provided reference genes

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