Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 0.0e+00 1107.4 550 100.0
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.3e-310 1066.6 550 96.2
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 3.8e-278 961.1 556 85.8
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 6.9e-264 913.7 557 79.9
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.3e-259 899.4 601 76.4
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 4.3e-258 894.4 559 79.8
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 3.7e-257 891.3 554 78.5
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.8e-256 889.0 558 81.7
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 3.1e-256 888.3 556 78.2
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 4.0e-256 887.9 556 78.2
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.5e-255 885.9 554 78.2
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 9.9e-255 883.2 559 77.5
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.3e-254 882.9 557 78.1
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.3e-254 882.9 557 78.1
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 3.8e-254 881.3 559 77.1
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 4.9e-254 880.9 557 77.7
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 3.2e-253 878.2 559 76.7
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 3.2e-253 878.2 558 77.4
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 5.5e-253 877.5 558 76.9
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 7.1e-253 877.1 557 77.6
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 7.1e-253 877.1 557 75.8
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.7e-252 875.2 556 76.8
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 3.5e-252 874.8 575 75.8
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 4.6e-252 874.4 556 76.8
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 4.6e-252 874.4 555 76.2
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 6.0e-252 874.0 557 77.6
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 5.1e-251 870.9 553 76.9
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.1e-250 869.8 556 76.8
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.1e-250 869.8 557 76.1
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.5e-250 869.4 556 76.4
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 1.5e-250 869.4 556 76.3
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.5e-250 869.4 559 76.0
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.5e-250 869.4 557 75.9
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 4.3e-250 867.8 558 76.7
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.6e-250 867.5 574 75.6
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 7.4e-250 867.1 560 75.4
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 9.6e-250 866.7 559 76.4
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.3e-249 866.3 558 76.7
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.6e-249 865.9 559 75.7
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 2.8e-249 865.1 560 75.2
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 4.8e-249 864.4 560 76.1
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 6.2e-249 864.0 559 76.6
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 6.2e-249 864.0 557 75.8
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 8.2e-249 863.6 557 76.3
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.2e-249 863.6 559 75.5
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 1.1e-248 863.2 565 75.4
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.4e-248 862.8 557 74.7
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 5.3e-248 860.9 557 76.3
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.5e-247 859.4 557 77.2
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 7.6e-247 857.1 541 77.6
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.0e-246 856.7 554 76.4
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 6.5e-246 854.0 557 76.1
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.5e-245 852.0 558 74.6
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 2.5e-245 852.0 557 74.9
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 3.2e-245 851.7 557 74.9
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 7.1e-245 850.5 557 75.9
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 2.7e-244 848.6 557 73.4
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 6.0e-244 847.4 558 74.4
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 6.0e-244 847.4 557 74.5
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.3e-243 846.3 558 74.2
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 2.3e-243 845.5 557 75.4
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 1.5e-242 842.8 559 74.2
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.9e-242 842.4 550 76.0
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 2.5e-242 842.0 558 73.5
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.6e-241 839.3 586 71.3
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.8e-241 838.6 557 74.9
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 8.2e-241 837.0 550 76.0
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 2.4e-240 835.5 560 72.9
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 3.1e-240 835.1 557 73.6
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 5.3e-240 834.3 539 75.9
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.2e-239 833.2 558 73.7
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.2e-239 833.2 553 73.8
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 7.6e-239 830.5 559 73.3
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 7.6e-239 830.5 559 73.3
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 7.6e-239 830.5 559 73.3
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 1.3e-238 829.7 560 72.9
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 3.8e-238 828.2 575 71.3
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.4e-237 826.2 557 73.2
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 1.9e-237 825.9 559 73.5
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 2.5e-237 825.5 559 73.5
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 4.2e-237 824.7 558 73.5
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 7.2e-237 823.9 559 73.3
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 9.3e-237 823.5 550 72.9
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 9.3e-237 823.5 557 72.2
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 6.1e-236 820.8 560 72.7
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.8e-235 819.3 559 72.8
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.1e-234 816.6 565 72.2
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 5.7e-234 814.3 559 72.3
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 5.7e-234 814.3 556 72.1
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.3e-233 813.1 556 72.5
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 1.6e-233 812.8 552 72.8
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 2.2e-233 812.4 565 72.0
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 2.8e-233 812.0 542 73.1
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 2.8e-233 812.0 556 71.6
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 4.8e-233 811.2 538 73.8
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 4.8e-233 811.2 514 77.8
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.1e-232 810.1 548 71.4
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.8e-232 809.3 577 70.7
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.8e-232 809.3 564 72.0
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.5e-231 806.2 531 75.7
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 2.6e-231 805.4 557 71.6
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 7.7e-231 803.9 559 71.0
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 8.5e-230 800.4 572 70.5
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 5.5e-229 797.7 561 73.3
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 2.1e-228 795.8 558 71.3
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 1.5e-226 789.6 540 72.2
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 5.7e-226 787.7 553 70.7
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.4e-223 778.5 602 66.4
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 1.7e-222 776.2 553 69.8
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 3.2e-221 771.9 562 69.4
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.3e-219 765.8 557 68.6
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 5.0e-214 748.0 560 67.3
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.5e-213 745.7 442 80.1
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 8.0e-212 740.7 490 74.5
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 6.7e-211 737.6 545 68.3
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.2e-210 736.9 488 73.0
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 4.4e-210 734.9 557 63.4
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.6e-204 715.3 545 66.8
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 6.5e-198 694.5 549 61.6
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.3e-193 680.2 563 62.7
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 4.3e-189 665.2 390 82.6
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.7e-182 643.3 433 73.7
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.1e-176 622.1 549 55.4
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.6e-175 620.2 391 76.5
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.0e-175 619.8 545 58.0
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.5e-173 612.8 390 77.2
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 1.4e-160 570.5 550 53.6
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 4.1e-160 568.9 552 55.3
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.2e-152 542.7 485 55.1
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 2.7e-151 539.7 322 80.1
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 4.2e-136 489.2 308 78.9
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.1e-135 486.9 292 78.8
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.9e-128 463.8 321 70.1
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.5e-127 459.5 336 67.3
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 3.0e-126 456.4 322 68.9
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.4e-122 443.0 291 73.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 5.0e-113 412.5 266 74.4
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.7e-103 380.2 273 67.8
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.7e-100 370.9 246 74.4
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 4.5e-98 362.8 238 76.9
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 8.8e-94 348.6 247 70.4
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 4.4e-85 319.7 240 68.8
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 3.1e-75 287.0 267 56.6
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 2.9e-52 210.7 141 75.2
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.2e-50 205.3 137 73.7
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 3.5e-50 203.8 181 60.8
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.7e-49 201.4 139 71.2
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.0e-49 200.7 138 71.7
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.1e-48 198.7 139 70.5
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.3e-44 185.3 128 71.9
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.2e-34 152.1 98 74.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 1.1e-32 145.6 98 72.4
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 9.3e-27 125.9 107 60.7
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 2.6e-21 107.8 63 77.8
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 3.4e-21 107.5 63 77.8
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.7e-20 105.1 71 67.6
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 8.4e-20 102.8 63 74.6
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 3.9e-17 94.0 57 70.2
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.1e-16 92.4 63 71.4
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.7e-16 90.1 63 69.8
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.4e-14 85.5 237 26.2
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 4.0e-14 84.0 489 24.7
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 3.4e-13 80.9 350 24.3
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 7.6e-13 79.7 54 70.4
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 9.3e-11 72.8 62 62.9
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 6.7e-09 66.6 52 55.8
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.3e-06 57.0 61 42.6


User provided reference genes

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