Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.8e-156 555.8 271 100.0
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.4e-153 546.2 271 97.4
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 3.5e-136 488.4 271 87.5
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 1.3e-125 453.4 270 82.2
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 3.6e-125 451.8 271 80.8
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 6.9e-124 447.6 271 81.9
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 6.9e-124 447.6 271 80.1
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 2.6e-123 445.7 271 80.1
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 2.6e-123 445.7 271 80.1
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 4.5e-123 444.9 271 79.3
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 2.9e-122 442.2 271 79.3
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 2.9e-122 442.2 271 79.3
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.4e-121 439.9 271 79.3
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 2.4e-121 439.1 271 78.6
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 2.4e-121 439.1 271 78.2
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 3.2e-121 438.7 271 79.3
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 4.2e-121 438.3 269 80.3
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 9.3e-121 437.2 270 79.3
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 1.2e-120 436.8 271 77.5
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 1.6e-120 436.4 271 78.2
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 2.1e-120 436.0 271 79.0
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 2.7e-120 435.6 270 79.3
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 2.7e-120 435.6 268 79.1
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.7e-120 435.6 270 78.1
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.7e-120 435.6 270 78.1
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 2.7e-120 435.6 270 78.9
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 3.5e-120 435.3 271 78.6
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 6.0e-120 434.5 271 78.6
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 6.0e-120 434.5 270 78.9
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 1.3e-119 433.3 271 78.2
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 1.3e-119 433.3 270 78.5
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 1.3e-119 433.3 271 79.3
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 1.8e-119 433.0 272 77.6
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 2.3e-119 432.6 268 78.4
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.0e-119 432.2 271 78.2
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.0e-119 432.2 279 77.4
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 3.0e-119 432.2 271 76.8
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 3.9e-119 431.8 271 77.1
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 3.9e-119 431.8 271 79.0
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 1.5e-118 429.9 271 76.8
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.5e-118 429.9 269 77.3
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 1.5e-118 429.9 268 78.0
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.9e-118 429.5 271 77.9
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 1.9e-118 429.5 271 79.0
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 1.9e-118 429.5 271 79.0
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 1.9e-118 429.5 271 77.5
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 2.5e-118 429.1 271 78.2
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 4.3e-118 428.3 271 76.8
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 5.6e-118 427.9 271 76.4
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 5.6e-118 427.9 271 77.1
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 5.6e-118 427.9 271 77.5
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 5.6e-118 427.9 271 77.1
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 1.3e-117 426.8 271 77.1
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.3e-117 426.8 271 77.9
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.3e-117 426.8 271 77.9
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.3e-117 426.8 271 77.9
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 1.6e-117 426.4 271 76.8
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 2.1e-117 426.0 272 76.5
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 3.7e-117 425.2 271 76.8
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 3.7e-117 425.2 271 76.8
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 3.7e-117 425.2 271 76.4
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 3.7e-117 425.2 271 76.4
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 3.7e-117 425.2 271 76.4
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 3.7e-117 425.2 271 76.4
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 3.7e-117 425.2 271 76.4
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 6.2e-117 424.5 271 76.0
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 6.2e-117 424.5 316 69.0
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 8.1e-117 424.1 271 76.0
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 8.1e-117 424.1 271 77.5
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.1e-117 424.1 271 77.5
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.1e-117 424.1 271 77.5
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.1e-117 424.1 271 77.5
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 8.1e-117 424.1 271 76.8
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 8.1e-117 424.1 271 76.0
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 8.1e-117 424.1 271 77.5
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 1.4e-116 423.3 271 75.3
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 1.8e-116 422.9 271 76.0
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.4e-116 422.5 271 75.6
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 4.0e-116 421.8 271 77.5
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 5.3e-116 421.4 271 75.6
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 5.3e-116 421.4 271 75.6
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.5e-115 419.9 271 74.5
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 3.4e-115 418.7 271 75.3
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 4.5e-115 418.3 272 75.0
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 4.5e-115 418.3 277 74.4
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 1.1e-113 413.7 271 74.9
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.9e-113 412.9 269 74.3
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 1.0e-111 407.1 244 81.6
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 5.1e-111 404.8 267 74.2
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 7.4e-110 401.0 417 54.0
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 1.6e-109 399.8 271 71.6
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 2.8e-109 399.1 271 72.3
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 1.1e-108 397.1 268 73.5
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 2.0e-107 392.9 280 71.1
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 3.4e-107 392.1 271 73.1
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 5.8e-107 391.3 264 73.5
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 5.5e-105 384.8 271 70.5
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.4e-100 370.2 223 79.8
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 5.9e-99 364.8 214 79.9
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 1.7e-98 363.2 271 69.0
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 3.2e-97 359.0 245 72.2
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 5.1e-95 351.7 271 67.2
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 7.7e-91 337.8 270 62.6
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 2.2e-90 336.3 212 77.8
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 7.4e-86 321.2 265 60.4
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 2.8e-85 319.3 261 62.1
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 3.7e-85 318.9 266 60.2
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 5.9e-83 311.6 217 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 2.3e-79 299.7 265 58.5
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 1.2e-70 270.8 170 74.7
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 1.5e-70 270.4 153 83.0
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 7.5e-70 268.1 179 73.2
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 2.0e-62 243.4 142 81.0
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 2.0e-59 233.4 146 78.8
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 5.0e-58 228.8 268 47.8
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 2.8e-56 223.0 271 51.3
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 8.0e-56 221.5 261 44.8
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 1.3e-53 214.2 130 78.5
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 2.2e-53 213.4 212 57.5
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.1e-52 209.1 114 81.6
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 5.6e-49 198.7 156 64.1
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.2e-46 191.0 287 38.7
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 1.2e-46 191.0 114 79.8
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.2e-45 186.8 126 74.6
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 8.6e-42 174.9 119 74.8
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 4.3e-41 172.6 119 72.3
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 7.5e-38 161.8 119 68.1
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 8.3e-37 158.3 104 74.0
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 4.1e-36 156.0 119 68.9
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 3.3e-33 146.4 91 72.5
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.1e-32 143.7 116 62.9
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 5.1e-26 122.5 102 61.8
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 2.6e-22 110.2 81 71.6
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 3.2e-20 103.2 92 62.0
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 6.0e-19 99.0 60 75.0
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 9.0e-15 85.1 55 74.5
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 3.0e-10 70.1 74 55.4
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 5.6e-09 65.9 39 84.6


User provided reference genes

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