Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034926 Chenopodium quinoa HOM05D003355 ORTHO05D006192 1.8e-151 539.3 287 100.0
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 3.0e-146 521.9 288 98.3
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 2.0e-142 509.2 287 95.5
AUR62032079 Chenopodium quinoa HOM05D003355 ORTHO05D006192 1.9e-132 476.1 251 100.0
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 4.7e-131 471.5 290 85.9
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 4.4e-129 464.9 297 83.8
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 4.3e-124 448.4 286 81.5
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 1.1e-122 443.7 286 81.1
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 1.1e-116 423.7 290 79.7
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 4.7e-115 418.3 291 75.6
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 4.7e-115 418.3 290 75.2
Sc06g0001940 Simmondsia chinensis HOM05D003355 ORTHO05D006192 4.7e-115 418.3 290 77.9
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 1.4e-114 416.8 291 75.9
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 5.2e-114 414.8 285 76.1
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 1.5e-113 413.3 280 77.1
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 2.6e-113 412.5 284 75.7
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 7.5e-113 411.0 291 74.6
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 1.3e-112 410.2 289 74.0
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 1.7e-112 409.8 286 74.8
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 4.9e-112 408.3 285 76.8
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 8.3e-112 407.5 285 76.1
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 8.3e-112 407.5 285 73.7
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 1.4e-111 406.8 273 75.1
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 4.1e-111 405.2 289 75.8
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 5.4e-111 404.8 282 74.5
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 7.1e-111 404.4 287 73.5
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 9.2e-111 404.1 294 75.2
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 1.2e-110 403.7 285 76.1
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 1.6e-110 403.3 287 73.2
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 2.7e-110 402.5 284 74.6
PGSC0003DMG400021187 Solanum tuberosum HOM05D003355 ORTHO05D006192 3.5e-110 402.1 287 72.1
Solyc02g069950.3 Solanum lycopersicum HOM05D003355 ORTHO05D006192 4.6e-110 401.7 287 72.1
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 7.8e-110 401.0 285 74.4
Sopen02g019090 Solanum pennellii HOM05D003355 ORTHO05D006192 2.3e-109 399.4 286 72.0
Rhsim10G0069800 Rhododendron simsii HOM05D003355 ORTHO05D006192 5.1e-109 398.3 297 70.4
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 6.6e-109 397.9 287 72.8
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 1.1e-108 397.1 287 74.6
CAN.G179.43 Capsicum annuum HOM05D003355 ORTHO05D006192 1.1e-108 397.1 285 73.0
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 4.3e-108 395.2 286 72.0
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 5.6e-108 394.8 290 74.1
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 9.5e-108 394.0 290 71.0
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 9.5e-108 394.0 290 71.0
Peaxi162Scf00616g00632 Petunia axillaris HOM05D003355 ORTHO05D006192 9.5e-108 394.0 287 74.9
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 1.6e-107 393.3 286 74.8
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 2.1e-107 392.9 290 73.8
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 6.2e-107 391.3 283 72.4
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 6.2e-107 391.3 291 73.9
Rhsim06G0239500 Rhododendron simsii HOM05D003355 ORTHO05D006192 6.2e-107 391.3 324 65.4
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 1.4e-106 390.2 285 71.9
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 6.8e-106 387.9 289 71.6
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 8.9e-106 387.5 289 70.6
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 2.6e-105 386.0 290 69.3
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 3.4e-105 385.6 290 69.3
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 4.4e-105 385.2 289 70.6
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 4.4e-105 385.2 288 69.8
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 7.6e-105 384.4 325 65.5
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 4.9e-104 381.7 287 70.0
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 8.4e-104 380.9 290 70.0
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 8.4e-104 380.9 290 69.3
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 2.4e-103 379.4 243 80.2
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 3.2e-103 379.0 291 68.4
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 3.2e-103 379.0 289 69.6
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 3.2e-103 379.0 294 70.4
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 4.2e-103 378.6 289 69.6
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 4.2e-103 378.6 286 69.9
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 4.2e-103 378.6 288 71.9
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 7.1e-103 377.9 289 72.0
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 7.1e-103 377.9 289 72.0
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 7.1e-103 377.9 285 71.9
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 4.6e-102 375.2 293 68.9
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 1.3e-101 373.6 286 68.5
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 1.7e-101 373.2 286 68.2
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 2.3e-101 372.9 293 68.6
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 4.3e-100 368.6 290 69.0
Carub.0006s0734 Capsella rubella HOM05D003355 ORTHO05D006192 9.6e-100 367.5 286 70.3
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 1.6e-99 366.7 283 72.4
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 2.1e-99 366.3 289 67.1
C09p68600 Brassica napus HOM05D003355 ORTHO05D006192 1.4e-98 363.6 285 70.2
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 1.8e-98 363.2 295 67.5
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 5.3e-98 361.7 283 70.3
AL6G18890 Arabidopsis lyrata HOM05D003355 ORTHO05D006192 1.3e-96 357.1 295 65.8
C02p03610 Brassica napus HOM05D003355 ORTHO05D006192 1.7e-96 356.7 278 69.1
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 1.7e-96 356.7 291 66.0
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 2.9e-96 355.9 297 68.4
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 3.8e-96 355.5 290 67.9
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 4.9e-96 355.1 285 68.4
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 6.4e-96 354.8 288 66.0
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 8.4e-96 354.4 289 66.1
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.1e-95 354.0 289 66.1
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 1.9e-95 353.2 285 66.3
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.6e-94 350.1 284 65.8
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 3.5e-94 349.0 290 67.2
AT5G08420 Arabidopsis thaliana HOM05D003355 ORTHO05D006192 7.8e-94 347.8 288 68.4
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 1.3e-93 347.1 294 67.7
SalBow8G2178 Salvia bowleyana HOM05D003355 ORTHO05D006192 3.0e-93 345.9 282 68.8
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 5.1e-93 345.1 285 67.7
Mapoly0002s0245 Marchantia polymorpha HOM05D003355 ORTHO05D006192 8.7e-93 344.4 293 64.2
Pp3c24_18710 Physcomitrium patens HOM05D003355 ORTHO05D006192 1.5e-92 343.6 286 65.0
Prupe.1G308200 Prunus persica HOM05D003355 ORTHO05D006192 1.9e-92 343.2 289 64.4
MELO3C012627.2 Cucumis melo HOM05D003355 ORTHO05D006192 1.6e-91 340.1 288 66.3
Haze_10137 Corylus avellana HOM05D003355 ORTHO05D006192 2.8e-91 339.3 289 64.7
AagrBONN_evm.TU.Sc2ySwM_117.1345 Anthoceros agrestis HOM05D003355 ORTHO05D006192 5.3e-90 335.1 290 62.4
BcaC03g13229 Brassica carinata HOM05D003355 ORTHO05D006192 6.9e-90 334.7 227 77.1
CARHR204600 Cardamine hirsuta HOM05D003355 ORTHO05D006192 9.0e-90 334.3 296 62.8
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 9.0e-90 334.3 234 76.5
PGR142G1845 Punica granatum HOM05D003355 ORTHO05D006192 2.6e-89 332.8 290 63.4
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 2.4e-87 326.2 289 65.1
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 5.4e-87 325.1 273 67.0
CDE07G1612 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 7.9e-86 321.2 235 71.5
QL02p103579 Quercus lobata HOM05D000004 ORTHO05D000002 3.0e-85 319.3 227 74.0
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 6.7e-85 318.2 226 73.0
Cre12.g508200 Chlamydomonas reinhardtii HOM05D003355 ORTHO05D006192 1.1e-84 317.4 280 62.1
CBR_g23447 Chara braunii HOM05D003355 ORTHO05D006192 4.8e-83 312.0 291 59.5
Sed0008456 Sechium edule HOM05D003355 ORTHO05D006192 1.8e-82 310.1 309 58.9
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 3.1e-82 309.3 285 63.9
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 4.0e-82 308.9 183 83.6
TAR371G0068 Trochodendron aralioides HOM05D003355 ORTHO05D006192 4.0e-82 308.9 240 66.7
Zm00001eb155040 Zea mays HOM05D003355 ORTHO05D006192 6.9e-82 308.1 294 60.2
Os01g0713800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 9.0e-82 307.8 290 59.7
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 5.8e-81 305.1 291 58.4
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 2.2e-80 303.1 296 60.5
MBI07_g21077_MAGBIO Magnolia biondii HOM05D003355 ORTHO05D006192 2.5e-79 299.7 292 57.2
MCO15G216 Micromonas commoda HOM05D003355 ORTHO05D006192 5.1e-77 292.0 249 62.2
BraA02t04958Z Brassica rapa HOM05D003355 ORTHO05D006192 1.9e-76 290.0 288 58.7
BolC2t06320H Brassica oleracea HOM05D003355 ORTHO05D006192 3.1e-74 282.7 233 67.4
SEGI_21388 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 1.3e-72 277.3 222 65.8
Cfa024749 Carpinus fangiana HOM05D003355 ORTHO05D006192 5.7e-68 261.9 232 62.9
Sabra07G0052100 Salix brachista HOM05D003355 ORTHO05D006192 1.4e-66 257.3 288 55.2
PRCOL_00006993 Prasinoderma coloniale HOM05D003355 ORTHO05D006192 5.9e-65 251.9 292 51.4
CDE07G0559 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 3.7e-59 232.6 123 91.1
AagrBONN_evm.TU.Sc2ySwM_228.4702 Anthoceros agrestis HOM05D003355 ORTHO05D006192 1.8e-58 230.3 185 63.8
unitig_46.g18517 Utricularia gibba HOM05D003355 ORTHO05D006192 9.1e-58 228.0 315 47.6
CAN.G322.12 Capsicum annuum HOM05D003355 ORTHO05D006192 1.7e-43 180.6 147 65.3
CARHR204610 Cardamine hirsuta HOM05D003355 ORTHO05D006192 4.8e-43 179.1 171 57.9
GSVIVG01012285001 Vitis vinifera HOM05D003355 ORTHO05D006192 7.7e-41 171.8 93 87.1
C02p02380 Brassica napus HOM05D003355 ORTHO05D006192 3.0e-37 159.8 108 76.9
BraA02t04852Z Brassica rapa HOM05D003355 ORTHO05D006192 6.8e-37 158.7 108 75.0
CARHR204150 Cardamine hirsuta HOM05D003355 ORTHO05D006192 4.8e-35 152.5 155 54.2
BolC2t06203H Brassica oleracea HOM05D003355 ORTHO05D006192 1.6e-33 147.5 108 72.2
BolC3t13633H Brassica oleracea HOM05D003355 ORTHO05D006192 3.8e-32 142.9 118 61.9
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 6.3e-27 125.6 138 51.4
BcaB05g21712 Brassica carinata HOM05D003355 ORTHO05D006192 7.7e-25 118.6 108 62.0
BraA03t10346Z Brassica rapa HOM05D003355 ORTHO05D006192 1.2e-22 111.3 111 52.3
QL02p032103 Quercus lobata HOM05D003355 ORTHO05D002623 4.0e-21 106.3 142 49.3
SEGI_15731 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 6.8e-21 105.5 56 91.1
SEGI_37851 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 6.8e-21 105.5 56 91.1
Actinidia29266 Actinidia chinensis HOM05D003355 ORTHO05D006192 2.0e-20 104.0 107 57.0
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 2.8e-19 100.1 141 45.4
RcHm_v2.0_Chr5g0014041 Rosa chinensis HOM05D003355 ORTHO05D013882 6.3e-19 99.0 143 42.7
QL02p103586 Quercus lobata HOM05D003355 ORTHO05D006192 1.8e-18 97.4 56 85.7
RcHm_v2.0_Chr5g0014031 Rosa chinensis HOM05D003355 ORTHO05D013882 2.0e-17 94.0 142 39.4
QL01p011915 Quercus lobata HOM05D003355 ORTHO05D006192 2.7e-17 93.6 56 82.1
MD04G1231500 Malus domestica HOM05D003355 ORTHO05D013882 2.9e-16 90.1 134 43.3
FAN19G0319 Fragaria x ananassa HOM05D003355 ORTHO05D013882 5.0e-16 89.4 142 37.3
FvH4_1g11160 Fragaria vesca HOM05D003355 ORTHO05D013882 6.6e-16 89.0 142 38.0
Glyma.09G058066 Glycine max HOM05D003355 ORTHO05D013882 6.6e-16 89.0 50 78.0
Prupe.2G125300 Prunus persica HOM05D003355 ORTHO05D013882 3.6e-14 83.2 139 40.3
RcHm_v2.0_Chr7g0179721 Rosa chinensis HOM05D003355 ORTHO05D025419 3.1e-13 80.1 140 40.0
MD02G1015700 Malus domestica HOM05D003355 ORTHO05D247400 4.0e-13 79.7 134 38.1
Prupe.6G351700 Prunus persica HOM05D003355 ORTHO05D013882 3.4e-12 76.6 131 41.2
CAN.G79.30 Capsicum annuum HOM05D003355 ORTHO05D115802 2.9e-11 73.6 193 31.6
RcHm_v2.0_Chr3g0469061 Rosa chinensis HOM05D003355 ORTHO05D022549 1.4e-10 71.2 141 37.6
RcHm_v2.0_Chr3g0469081 Rosa chinensis HOM05D003355 ORTHO05D022549 1.4e-10 71.2 141 37.6
MD02G1059000 Malus domestica HOM05D003355 ORTHO05D247816 2.4e-10 70.5 127 40.9
FvH4_2g01170 Fragaria vesca HOM05D003355 ORTHO05D025419 2.7e-09 67.0 144 35.4
RcHm_v2.0_Chr3g0481091 Rosa chinensis HOM05D011179 ORTHO05D017929 3.9e-08 63.2 133 36.1
FvH4_3g45301 Fragaria vesca HOM05D003355 ORTHO05D013882 8.6e-08 62.0 104 35.6
RcHm_v2.0_Chr1g0368121 Rosa chinensis HOM05D003355 ORTHO05D019199 8.6e-08 62.0 137 31.4
RcHm_v2.0_Chr1g0368161 Rosa chinensis HOM05D003355 ORTHO05D019199 8.6e-08 62.0 141 31.9
RcHm_v2.0_Chr1g0368141 Rosa chinensis HOM05D003355 ORTHO05D019199 1.1e-07 61.6 137 31.4
FAN05G2571 Fragaria x ananassa HOM05D012211 ORTHO05D045515 9.5e-07 58.5 122 34.4
FAN15G0401 Fragaria x ananassa HOM05D003355 ORTHO05D015652 9.5e-07 58.5 142 33.1
FAN24G2229 Fragaria x ananassa HOM05D003355 ORTHO05D025419 1.2e-06 58.2 166 30.1
FAN28G2737 Fragaria x ananassa HOM05D003355 ORTHO05D013882 1.2e-06 58.2 59 42.4
MD02G1058900 Malus domestica HOM05D003355 ORTHO05D247873 1.6e-06 57.8 58 51.7
FvH4_6g42550 Fragaria vesca HOM05D012211 ORTHO05D045515 2.8e-06 57.0 122 34.4
FAN14G1550 Fragaria x ananassa HOM05D012211 ORTHO05D204992 2.8e-06 57.0 122 34.4
Lsat_1_v5_gn_4_108400 Lactuca sativa HOM05D003355 ORTHO05D005088 2.8e-06 57.0 33 90.9
RcHm_v2.0_Chr7g0210441 Rosa chinensis HOM05D012211 ORTHO05D029661 2.8e-06 57.0 125 36.0
FvH4_6g02020 Fragaria vesca HOM05D017208 ORTHO05D025447 4.7e-06 56.2 127 27.6
RcHm_v2.0_Chr7g0188481 Rosa chinensis HOM05D011179 ORTHO05D017929 4.7e-06 56.2 126 35.7
RcHm_v2.0_Chr2g0090081 Rosa chinensis HOM05D003355 ORTHO05D015652 6.2e-06 55.8 128 32.0


User provided reference genes

Program Settings