Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.2e-95 353.2 184 100.0
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.7e-89 332.8 184 93.5
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.9e-89 332.0 184 95.7
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.0e-86 323.6 184 89.1
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.1e-80 303.5 184 89.1
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 7.1e-80 300.8 178 83.7
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.9e-77 292.7 181 80.1
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 6.2e-76 287.7 181 78.5
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 6.2e-76 287.7 181 77.9
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 1.1e-75 287.0 181 78.5
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 2.3e-75 285.8 179 77.7
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 3.1e-75 285.4 181 77.3
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.2e-75 284.6 179 78.2
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 6.8e-75 284.3 181 79.6
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 2.6e-74 282.3 181 77.3
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.4e-74 282.0 181 79.0
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.4e-74 281.6 179 77.7
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 7.6e-74 280.8 182 76.9
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.6e-74 280.8 182 76.9
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 9.9e-74 280.4 179 78.2
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 9.9e-74 280.4 181 77.3
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.3e-73 280.0 179 77.7
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.7e-73 279.6 181 76.8
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.9e-73 278.9 181 75.7
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.7e-73 278.5 182 75.8
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 4.9e-73 278.1 181 76.2
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 6.4e-73 277.7 181 74.0
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.1e-72 276.9 179 76.5
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.1e-72 276.9 181 76.2
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.4e-72 276.6 181 74.6
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.9e-72 276.2 179 77.1
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.9e-72 276.2 179 76.5
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 3.2e-72 275.4 182 74.2
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 3.2e-72 275.4 179 74.9
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 4.1e-72 275.0 181 73.5
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 5.4e-72 274.6 179 75.4
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 5.4e-72 274.6 180 72.8
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 9.2e-72 273.9 182 76.4
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 9.2e-72 273.9 182 75.3
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 9.2e-72 273.9 180 72.8
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 9.2e-72 273.9 181 76.2
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 1.2e-71 273.5 180 74.4
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.6e-71 273.1 179 76.0
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.6e-71 273.1 181 72.9
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 4.6e-71 271.6 179 76.5
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.6e-71 271.6 180 72.8
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 7.8e-71 270.8 179 74.9
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 7.8e-71 270.8 181 75.1
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.0e-70 270.4 179 74.9
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-70 269.2 183 76.0
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 3.0e-70 268.9 182 73.1
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 3.9e-70 268.5 184 77.2
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.9e-70 268.5 182 73.6
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 6.6e-70 267.7 179 73.2
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 6.6e-70 267.7 179 75.4
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 8.6e-70 267.3 179 72.6
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 8.6e-70 267.3 179 74.3
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.1e-69 266.9 179 76.5
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.5e-69 265.8 179 74.3
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.3e-69 264.2 192 69.8
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 9.6e-69 263.8 181 72.4
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 9.6e-69 263.8 181 74.0
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.6e-68 263.1 175 73.1
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 1.6e-68 263.1 181 71.3
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 8.1e-68 260.8 183 72.7
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.1e-67 260.4 181 69.6
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.4e-67 260.0 182 69.2
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.8e-67 259.6 181 71.8
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.8e-67 259.6 179 72.6
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 8.9e-67 257.3 185 72.4
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.5e-66 256.5 182 68.1
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 2.0e-66 256.1 181 69.6
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 2.0e-66 256.1 181 69.6
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 2.0e-66 256.1 181 70.2
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 2.6e-66 255.8 181 68.5
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 2.6e-66 255.8 181 68.5
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.4e-66 255.4 179 68.7
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 3.4e-66 255.4 181 68.5
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 3.4e-66 255.4 181 68.5
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 7.6e-66 254.2 181 68.5
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 7.6e-66 254.2 162 77.8
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 9.9e-66 253.8 181 69.1
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 9.9e-66 253.8 181 68.0
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 9.9e-66 253.8 181 69.1
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 1.7e-65 253.1 181 68.5
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 2.2e-65 252.7 181 71.8
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 2.2e-65 252.7 181 69.1
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.9e-65 252.3 181 69.1
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 2.9e-65 252.3 182 68.7
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 2.9e-65 252.3 181 70.7
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 4.9e-65 251.5 182 68.1
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 6.4e-65 251.1 182 67.0
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 8.4e-65 250.8 181 69.6
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.1e-64 250.4 182 68.7
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.4e-64 250.0 181 68.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 9.3e-64 247.3 164 74.4
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 9.3e-64 247.3 180 65.6
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 9.3e-64 247.3 180 66.7
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.2e-63 246.9 182 67.6
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 2.1e-63 246.1 181 68.0
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 2.1e-63 246.1 181 66.9
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 2.7e-63 245.7 164 73.8
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.0e-62 243.8 184 65.8
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 1.3e-62 243.4 181 66.3
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 5.1e-62 241.5 177 67.2
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 5.1e-62 241.5 167 76.0
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.9e-61 239.6 156 77.6
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 5.6e-61 238.0 179 66.5
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 4.8e-60 235.0 182 62.6
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.4e-59 232.6 172 69.8
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 5.3e-59 231.5 166 68.1
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.0e-58 229.6 165 68.5
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 9.9e-58 227.3 181 65.7
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.7e-57 226.5 181 63.0
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 9.3e-56 220.7 309 44.3
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.0e-54 217.2 179 62.6
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 4.3e-53 211.8 167 67.1
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.8e-51 206.5 218 55.0
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-50 203.4 203 58.1
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.1e-48 197.2 231 50.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.4e-48 196.8 201 52.7
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.9e-48 196.4 200 55.0
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.2e-48 195.3 179 54.7
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.1e-47 193.0 181 54.1
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 4.3e-45 185.3 128 74.2
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.8e-44 182.6 223 48.9
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 9.0e-43 177.6 117 72.6
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.9e-41 171.8 173 51.4
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 9.3e-40 167.5 180 53.3
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 4.6e-39 165.2 116 71.6
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 4.3e-37 158.7 184 47.8
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 9.3e-32 141.0 135 54.1
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 2.1e-31 139.8 93 73.1
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 1.8e-30 136.7 92 69.6
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 5.7e-29 131.7 87 72.4
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 8.2e-28 127.9 93 66.7
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.4e-27 127.1 192 38.0
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.2e-26 124.0 96 65.6
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.0e-25 120.9 127 54.3
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 7.2e-24 114.8 75 70.7
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 2.7e-23 112.8 130 50.0
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 4.6e-23 112.1 186 38.7
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.3e-22 109.8 64 81.2
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.5e-21 107.1 64 79.7
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 5.7e-21 105.1 66 72.7
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.7e-21 105.1 70 75.7
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 9.7e-21 104.4 77 68.8
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-20 104.0 68 77.9
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 6.3e-20 101.7 99 56.6
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-19 100.9 66 71.2
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.9e-19 98.2 72 63.9
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 4.5e-18 95.5 85 54.1
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 7.7e-18 94.7 70 62.9
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.4e-16 90.5 75 60.0
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.6e-15 87.0 118 46.6
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.8e-14 83.6 47 85.1
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 3.3e-13 79.3 188 32.4
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 7.0e-11 71.6 49 67.3
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 9.1e-11 71.2 180 32.2
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.0e-09 67.8 45 66.7
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 7.2e-08 61.6 42 69.0
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 1.4e-06 57.4 39 71.8
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.8e-06 57.0 76 42.1
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 2.3e-06 56.6 53 54.7
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 5.2e-06 55.5 70 38.6


User provided reference genes

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