Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.3e-82 309.7 158 100.0
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 9.4e-49 197.2 104 95.2
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 6.8e-47 191.0 103 93.2
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 5.0e-42 174.9 102 85.3
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.7e-40 168.3 101 86.1
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 1.6e-27 126.7 107 68.2
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 2.7e-27 125.9 124 58.1
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 3.5e-27 125.6 109 66.1
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.0e-26 124.0 109 65.1
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 1.0e-26 124.0 112 64.3
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 1.0e-26 124.0 109 66.1
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.7e-26 123.2 114 63.2
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.7e-26 123.2 111 64.9
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.7e-26 123.2 114 63.2
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.7e-26 123.2 111 64.9
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 1.7e-26 123.2 112 64.3
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 2.3e-26 122.9 112 64.3
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 3.0e-26 122.5 111 64.0
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 3.0e-26 122.5 123 57.7
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 5.0e-26 121.7 115 58.3
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 8.6e-26 120.9 112 63.4
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 8.6e-26 120.9 112 63.4
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 8.6e-26 120.9 112 63.4
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 4.3e-25 118.6 114 61.4
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 3.1e-23 112.5 85 70.6
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.2e-22 110.5 110 57.3
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.5e-22 110.2 110 57.3
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 3.4e-22 109.0 110 58.2
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 4.4e-22 108.6 122 52.5
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.8e-22 108.2 110 56.4
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 7.5e-22 107.8 122 52.5
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 1.7e-21 106.7 104 56.7
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.2e-21 106.3 110 55.5
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 4.9e-21 105.1 110 54.5
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.4e-20 103.6 124 51.6
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 9.2e-20 100.9 105 58.1
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 4.6e-19 98.6 126 50.8
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 1.0e-18 97.4 108 53.7
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 1.3e-18 97.1 107 52.3
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 2.3e-18 96.3 118 50.0
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.9e-18 95.5 122 47.5
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 1.1e-17 94.0 101 55.4
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.5e-17 93.6 110 50.9
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 1.9e-17 93.2 104 53.8
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 2.5e-17 92.8 109 53.2
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 2.5e-17 92.8 124 48.4
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 4.3e-17 92.0 108 51.9
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 9.5e-17 90.9 121 46.3
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 1.6e-16 90.1 105 50.5
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.1e-16 89.7 68 73.5
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 4.7e-16 88.6 126 49.2
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 8.1e-16 87.8 136 45.6
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 8.1e-16 87.8 135 45.2
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.4e-15 87.0 86 58.1
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 2.3e-15 86.3 120 47.5
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 1.2e-14 84.0 70 72.9
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 1.2e-14 84.0 123 45.5
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 2.6e-14 82.8 124 45.2
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 5.8e-14 81.6 124 45.2
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 5.8e-14 81.6 124 44.4
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 1.3e-13 80.5 124 44.4
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 2.9e-13 79.3 125 44.0
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.7e-13 79.0 128 43.0
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 4.9e-13 78.6 108 50.9
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 6.4e-13 78.2 122 43.4
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 1.4e-12 77.0 69 60.9
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.4e-12 77.0 108 48.1
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.4e-12 77.0 108 48.1
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.4e-12 77.0 108 48.1
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.4e-12 77.0 124 41.9
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 1.9e-12 76.6 125 42.4
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 1.9e-12 76.6 127 40.9
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 1.9e-12 76.6 126 43.7
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 1.9e-12 76.6 108 49.1
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 3.2e-12 75.9 85 52.9
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 4.1e-12 75.5 109 48.6
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 4.1e-12 75.5 108 46.3
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 4.1e-12 75.5 107 44.9
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 7.1e-12 74.7 107 45.8
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 9.2e-12 74.3 125 43.2
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.2e-11 73.9 124 41.9
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.6e-11 73.6 107 45.8
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 1.6e-11 73.6 127 42.5
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 2.1e-11 73.2 123 43.9
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 2.1e-11 73.2 123 41.5
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 2.1e-11 73.2 113 46.9
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 2.7e-11 72.8 106 44.3
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 2.7e-11 72.8 74 59.5
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 3.5e-11 72.4 85 52.9
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 4.6e-11 72.0 125 40.8
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 4.6e-11 72.0 127 39.4
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 4.6e-11 72.0 66 62.1
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 7.8e-11 71.2 125 40.0
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 7.8e-11 71.2 124 42.7
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 7.8e-11 71.2 109 48.6
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.0e-10 70.9 99 47.5
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.3e-10 70.5 130 40.8
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 2.3e-10 69.7 131 41.2
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 2.3e-10 69.7 126 42.1
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 3.0e-10 69.3 99 46.5
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 3.0e-10 69.3 131 42.0
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 3.9e-10 68.9 134 41.0
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 6.6e-10 68.2 121 38.8
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 6.6e-10 68.2 123 42.3
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 8.6e-10 67.8 80 46.2
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.1e-09 67.4 124 40.3
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 1.5e-09 67.0 123 39.8
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 1.5e-09 67.0 85 50.6
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.9e-09 66.6 130 38.5
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 3.3e-09 65.9 124 37.9
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 3.3e-09 65.9 124 37.9
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 3.3e-09 65.9 121 41.3
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 3.3e-09 65.9 134 40.3
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 3.3e-09 65.9 86 48.8
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 5.6e-09 65.1 135 38.5
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 9.5e-09 64.3 129 38.0
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 9.5e-09 64.3 87 47.1
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 1.2e-08 63.9 114 43.0
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 1.6e-08 63.5 67 55.2
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 1.6e-08 63.5 126 38.9
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.6e-08 63.5 126 38.9
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 1.6e-08 63.5 125 39.2
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.6e-08 63.5 105 42.9
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 3.6e-08 62.4 115 40.0
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 4.7e-08 62.0 86 46.5
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 8.1e-08 61.2 60 63.3
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 8.1e-08 61.2 85 45.9
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.4e-07 60.5 119 38.7
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 1.4e-07 60.5 82 42.7
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.8e-07 60.1 129 36.4
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 2.3e-07 59.7 125 36.0
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 2.3e-07 59.7 73 43.8
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 5.2e-07 58.5 81 40.7
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 4.4e-06 55.5 120 35.8
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 5.8e-06 55.1 74 41.9
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 7.6e-06 54.7 122 33.6
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 9.9e-06 54.3 84 38.1


User provided reference genes

Program Settings