Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034825 Chenopodium quinoa HOM05D006563 ORTHO05D008154 3.7e-115 418.3 222 100.0
AUR62029612 Chenopodium quinoa HOM05D006563 ORTHO05D008154 3.0e-109 398.7 215 91.2
EL10Ac5g11412 Beta vulgaris HOM05D006563 ORTHO05D008154 1.1e-92 343.6 215 79.1
Dinv23146 Davidia involucrata HOM05D006563 ORTHO05D008154 1.2e-89 333.6 206 78.2
Cpa.g.sc13.115 Carica papaya HOM05D006563 ORTHO05D008154 3.8e-88 328.6 209 76.6
Hund02442 Selenicereus undatus HOM05D006563 ORTHO05D008154 6.5e-88 327.8 214 76.6
GSVIVG01008544001 Vitis vinifera HOM05D006563 ORTHO05D008154 1.9e-87 326.2 211 75.8
Ciclev10032657m.g Citrus clementina HOM05D006563 ORTHO05D008154 3.2e-87 325.5 211 75.4
CAN.G352.13 Capsicum annuum HOM05D006563 ORTHO05D008154 9.4e-87 323.9 208 76.4
Peaxi162Scf00089g00627 Petunia axillaris HOM05D006563 ORTHO05D008154 9.4e-87 323.9 208 76.4
Manes.06G119700 Manihot esculenta HOM05D006563 ORTHO05D008154 2.7e-86 322.4 209 74.6
Nitab4.5_0003282g0060 Nicotiana tabacum HOM05D006563 ORTHO05D008154 3.6e-86 322.0 206 76.7
TAR374G0821 Trochodendron aralioides HOM05D006563 ORTHO05D008154 6.1e-86 321.2 206 75.2
Nitab4.5_0004750g0020 Nicotiana tabacum HOM05D006563 ORTHO05D008154 1.0e-85 320.5 209 76.1
Atru.chr6.1794 Acer truncatum HOM05D006563 ORTHO05D008154 1.8e-85 319.7 207 74.4
FAN04G0682 Fragaria x ananassa HOM05D006563 ORTHO05D008154 3.0e-85 318.9 207 74.9
Phvul.003G211300 Phaseolus vulgaris HOM05D006563 ORTHO05D008154 3.0e-85 318.9 207 75.4
Sc04g0000640 Simmondsia chinensis HOM05D006563 ORTHO05D008154 3.0e-85 318.9 206 74.8
CANSAT80G0303 Cannabis sativa HOM05D006563 ORTHO05D008154 3.9e-85 318.5 209 74.6
Glyma.05G048400 Glycine max HOM05D006563 ORTHO05D008154 3.9e-85 318.5 206 76.2
Nn4g22315 Nelumbo nucifera HOM05D006563 ORTHO05D008154 3.9e-85 318.5 206 74.8
TWI39G0919 Tripterygium wilfordii HOM05D006563 ORTHO05D008154 3.9e-85 318.5 206 75.2
FAN18G2834 Fragaria x ananassa HOM05D006563 ORTHO05D008154 5.1e-85 318.2 207 74.4
Prupe.5G150900 Prunus persica HOM05D006563 ORTHO05D008154 5.1e-85 318.2 207 74.9
Solyc03g111350.3 Solanum lycopersicum HOM05D006563 ORTHO05D008154 6.7e-85 317.8 208 75.0
Hma1.2p1_0426F.1_g150610 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.1e-84 317.0 207 76.3
MD14G1156900 Malus domestica HOM05D006563 ORTHO05D008154 1.1e-84 317.0 207 74.4
Potri.015G096400 Populus trichocarpa HOM05D006563 ORTHO05D008154 1.1e-84 317.0 211 73.9
Sabra15G0117200 Salix brachista HOM05D006563 ORTHO05D008154 1.5e-84 316.6 211 73.0
Ca_26101_v3 Cicer arietinum L. HOM05D006563 ORTHO05D008154 2.0e-84 316.2 206 74.3
FvH4_5g08340 Fragaria vesca HOM05D006563 ORTHO05D008154 2.6e-84 315.8 207 73.9
FAN04G3009 Fragaria x ananassa HOM05D006563 ORTHO05D008154 3.3e-84 315.5 207 74.4
FAN13G1867 Fragaria x ananassa HOM05D006563 ORTHO05D008154 3.3e-84 315.5 207 74.4
Sopen03g030480 Solanum pennellii HOM05D006563 ORTHO05D008154 3.3e-84 315.5 208 74.0
ClCG03G003770 Citrullus lanatus HOM05D006563 ORTHO05D008154 4.4e-84 315.1 209 73.7
RcHm_v2.0_Chr7g0190121 Rosa chinensis HOM05D006563 ORTHO05D008154 4.4e-84 315.1 207 74.4
PGSC0003DMG400015182 Solanum tuberosum HOM05D006563 ORTHO05D008154 4.4e-84 315.1 208 74.0
MELO3C002362.2 Cucumis melo HOM05D006563 ORTHO05D008154 5.7e-84 314.7 206 73.8
Eucgr.B00111 Eucalyptus grandis HOM05D006563 ORTHO05D008154 5.7e-84 314.7 219 79.0
CDE05G1358 Ceratophyllum demersum HOM05D006563 ORTHO05D008154 7.4e-84 314.3 206 73.3
HanXRQChr13g0408701 Helianthus annuus HOM05D006563 ORTHO05D008154 1.7e-83 313.2 208 72.6
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 1.7e-83 313.2 206 73.8
Lj4g0002806 Lotus japonicus HOM05D006563 ORTHO05D008154 2.2e-83 312.8 206 73.3
COL.COLO4_28130 Corchorus olitorius HOM05D006563 ORTHO05D008154 2.8e-83 312.4 207 75.4
CsaV3_1G009660 Cucumis sativus L. HOM05D006563 ORTHO05D008154 3.7e-83 312.0 206 73.8
Gorai.008G206400 Gossypium raimondii HOM05D006563 ORTHO05D008154 4.8e-83 311.6 207 73.4
SGA_v2.0_scaffold7G04149 Striga asiatica HOM05D006563 ORTHO05D008154 4.8e-83 311.6 206 72.8
Carub.0005s1473 Capsella rubella HOM05D006563 ORTHO05D008154 6.3e-83 311.2 206 71.4
Gohir.D12G192100 Gossypium hirsutum HOM05D006563 ORTHO05D008154 6.3e-83 311.2 207 73.4
Oeu036009.4 Olea europaea HOM05D006563 ORTHO05D008154 6.3e-83 311.2 207 72.9
Actinidia08872 Actinidia chinensis HOM05D006563 ORTHO05D008154 8.2e-83 310.8 206 72.3
Duzib205G1898 Durio zibethinus HOM05D006563 ORTHO05D008154 1.8e-82 309.7 207 72.9
Migut.D01965 Erythranthe guttata HOM05D006563 ORTHO05D008154 1.8e-82 309.7 209 73.7
SalBow6G4201 Salvia bowleyana HOM05D006563 ORTHO05D008154 5.3e-82 308.1 206 70.9
SalBow6G4357 Salvia bowleyana HOM05D006563 ORTHO05D008154 5.3e-82 308.1 206 70.9
Gohir.A12G189700 Gossypium hirsutum HOM05D006563 ORTHO05D008154 7.0e-82 307.8 207 72.5
AL5G27990 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 9.1e-82 307.4 208 71.6
AT3G48540 Arabidopsis thaliana HOM05D006563 ORTHO05D008154 1.2e-81 307.0 208 71.6
Medtr4g103300 Medicago truncatula HOM05D006563 ORTHO05D008154 1.2e-81 307.0 214 70.1
CSS0042372 Camellia sinensis var. sinensis HOM05D006563 ORTHO05D008154 1.6e-81 306.6 206 72.3
ATR0561G278 Amborella trichopoda HOM05D006563 ORTHO05D008154 2.6e-81 305.8 206 71.4
Sp5g13440 Schrenkiella parvula HOM05D006563 ORTHO05D008154 3.5e-81 305.4 206 70.9
Rhsim12G0174600 Rhododendron simsii HOM05D006563 ORTHO05D008154 5.9e-81 304.7 208 71.6
Thhalv10010696m.g Eutrema salsugineum HOM05D006563 ORTHO05D008154 7.7e-81 304.3 208 69.7
Aa31LG4G17160 Aethionema arabicum HOM05D006563 ORTHO05D008154 1.3e-80 303.5 211 70.6
Thecc.03G129300 Theobroma cacao HOM05D006563 ORTHO05D008154 1.3e-80 303.5 210 71.9
MSTRG.9682 Avicennia marina HOM05D006563 ORTHO05D008154 1.7e-80 303.1 206 69.9
Sed0017169 Sechium edule HOM05D006563 ORTHO05D008154 2.2e-80 302.8 209 71.3
BcaB05g23009 Brassica carinata HOM05D006563 ORTHO05D008154 3.8e-80 302.0 205 70.7
A01p25680 Brassica napus HOM05D006563 ORTHO05D008154 5.0e-80 301.6 205 69.8
BraA01t02447Z Brassica rapa HOM05D006563 ORTHO05D008154 5.0e-80 301.6 205 69.8
BcaC09g49875 Brassica carinata HOM05D006563 ORTHO05D008154 6.5e-80 301.2 205 69.8
C01p32250 Brassica napus HOM05D006563 ORTHO05D008154 6.5e-80 301.2 205 69.8
QL10p002894 Quercus lobata HOM05D006563 ORTHO05D008154 6.5e-80 301.2 232 66.4
Lsat_1_v5_gn_1_28920 Lactuca sativa HOM05D006563 ORTHO05D008154 1.1e-79 300.4 206 70.9
Aqoxy5G03376 Aquilegia oxysepala HOM05D006563 ORTHO05D008154 4.2e-79 298.5 216 75.5
BolC1t03129H Brassica oleracea HOM05D006563 ORTHO05D008154 4.2e-79 298.5 205 69.3
PSO017G5417 Papaver somniferum HOM05D006563 ORTHO05D008154 7.2e-79 297.7 209 70.3
CARHR157340 Cardamine hirsuta HOM05D006563 ORTHO05D008154 1.6e-78 296.6 208 68.8
PSO478G0702 Papaver somniferum HOM05D006563 ORTHO05D008154 2.1e-78 296.2 218 68.3
HPP92_025255 Vanilla planifolia HOM05D006563 ORTHO05D008154 2.1e-78 296.2 207 70.0
Cc09_g04000 Coffea canephora HOM05D006563 ORTHO05D008154 2.7e-78 295.8 227 70.5
Oeu040847.2 Olea europaea HOM05D006563 ORTHO05D008154 6.1e-78 294.7 241 62.2
MBI07_g16949_MAGBIO Magnolia biondii HOM05D006563 ORTHO05D008154 1.4e-77 293.5 215 68.4
Os01g0765000 Oryza sativa ssp. japonica HOM05D006563 ORTHO05D008154 3.0e-77 292.4 214 67.8
unitig_46.g18474 Utricularia gibba HOM05D006563 ORTHO05D008154 2.8e-75 285.8 211 67.8
FAN08G2924 Fragaria x ananassa HOM05D006563 ORTHO05D008154 4.1e-74 282.0 228 63.6
Haze_07139 Corylus avellana HOM05D006563 ORTHO05D008154 2.2e-72 276.2 210 67.1
SEGI_38890 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 5.0e-72 275.0 224 61.2
CiPaw.11G007100 Carya illinoinensis HOM05D006563 ORTHO05D008154 1.1e-71 273.9 206 67.0
arahy.Tifrunner.gnm1.ann1.G9M8TR Arachis hypogaea HOM05D006563 ORTHO05D008154 3.2e-71 272.3 206 66.0
PGR044G0473 Punica granatum HOM05D006563 ORTHO05D008154 3.2e-71 272.3 210 67.1
arahy.Tifrunner.gnm1.ann1.76974R Arachis hypogaea HOM05D006563 ORTHO05D008154 2.3e-69 266.2 216 63.9
VMungo1215G3263 Vigna mungo HOM05D006563 ORTHO05D008154 1.2e-68 263.8 175 73.1
Potri.012G097800 Populus trichocarpa HOM05D006563 ORTHO05D008154 1.3e-67 260.4 209 64.1
Sc04g0000170 Simmondsia chinensis HOM05D006563 ORTHO05D008154 1.3e-67 260.4 213 63.4
TPR.G19207 Trifolium pratense HOM05D006563 ORTHO05D008154 1.8e-66 256.5 149 82.6
Pp3c2_32260 Physcomitrium patens HOM05D006563 ORTHO05D008154 4.1e-66 255.4 159 70.4
AagrBONN_evm.TU.Sc2ySwM_228.2386 Anthoceros agrestis HOM05D006563 ORTHO05D008154 2.9e-64 249.2 159 73.6
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 8.5e-64 247.7 154 80.5
SMO116G0330 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 2.0e-60 236.5 144 75.7
Medtr4g057655 Medicago truncatula HOM05D006563 ORTHO05D008154 5.7e-60 235.0 208 59.1
Zm00001eb370270 Zea mays HOM05D006563 ORTHO05D008154 7.5e-60 234.6 175 66.3
vmacro16718 Vaccinium macrocarpon HOM05D006563 ORTHO05D008154 1.3e-59 233.8 334 42.8
DCAR_016389 Daucus carota HOM05D006563 ORTHO05D008154 3.7e-59 232.3 220 56.8
Lj5A96G46 Lonicera japonica HOM05D006563 ORTHO05D008154 1.8e-58 229.9 147 77.6
Lalb_Chr13g0297241 Lupinus albus HOM05D006563 ORTHO05D008154 1.7e-56 223.4 154 69.5
PRCOL_00002657 Prasinoderma coloniale HOM05D006563 ORTHO05D008154 5.6e-55 218.4 155 61.3
Medtr4g071665 Medicago truncatula HOM05D006563 ORTHO05D008154 2.1e-54 216.5 208 56.2
Cc09_g03990 Coffea canephora HOM05D006563 ORTHO05D008154 3.2e-50 202.6 106 88.7
MCO04G397 Micromonas commoda HOM05D006563 ORTHO05D008154 9.2e-50 201.1 134 65.7
Cre19.g750897 Chlamydomonas reinhardtii HOM05D006563 ORTHO05D008154 2.9e-43 179.5 173 51.4
Haze_26466 Corylus avellana HOM05D006563 ORTHO05D008154 7.5e-36 154.8 148 50.0
CBR_g19095 Chara braunii HOM05D006563 ORTHO05D008154 1.7e-35 153.7 118 60.2
AL1G65740 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 2.2e-27 126.7 63 90.5
SMO361G0344 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 2.1e-25 120.2 63 81.0
SMO199G0092 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 3.1e-21 106.3 74 67.6
MD06G1141700 Malus domestica HOM05D006563 ORTHO05D008154 5.2e-21 105.5 144 42.4
Hma1.2p1_0426F.1_g150600 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 9.9e-20 101.3 89 59.6
SEGI_22016 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 8.4e-19 98.2 118 44.9
Hma1.2p1_0426F.1_g150620 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.6e-17 94.0 53 86.8


User provided reference genes

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