Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 8.3e-35 149.8 76 100.0
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 8.3e-35 149.8 76 100.0
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 8.0e-30 133.3 75 85.3
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.6e-28 128.3 75 81.3
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 3.4e-28 127.9 75 81.3
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.4e-28 127.9 75 81.3
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 3.2e-26 121.3 75 76.0
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 4.1e-26 120.9 75 76.0
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 4.1e-26 120.9 75 76.0
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 5.4e-26 120.6 75 77.3
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 9.2e-26 119.8 74 75.7
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.2e-25 119.4 75 76.0
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 1.2e-25 119.4 75 76.0
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.6e-25 119.0 75 76.0
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.0e-25 118.6 73 76.7
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 2.0e-25 118.6 75 73.3
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.7e-25 118.2 71 77.5
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 3.5e-25 117.9 75 73.3
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 3.5e-25 117.9 73 75.3
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 3.5e-25 117.9 73 75.3
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.5e-25 117.9 75 73.3
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 6.0e-25 117.1 72 76.4
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 6.0e-25 117.1 75 73.3
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 6.0e-25 117.1 75 73.3
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 7.8e-25 116.7 75 73.3
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.0e-24 116.3 75 73.3
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.0e-24 116.3 75 72.0
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 1.0e-24 116.3 75 69.3
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.0e-24 116.3 75 72.0
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.3e-24 115.9 72 73.6
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.3e-24 115.9 75 70.7
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-24 115.5 72 72.2
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-24 115.5 72 72.2
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.7e-24 115.5 75 70.7
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.7e-24 115.5 75 72.0
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.7e-24 115.5 75 72.0
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.3e-24 115.2 75 72.0
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 3.0e-24 114.8 70 78.6
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 3.0e-24 114.8 75 70.7
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 3.0e-24 114.8 73 71.2
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 3.9e-24 114.4 73 74.0
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 3.9e-24 114.4 70 75.7
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 3.9e-24 114.4 73 72.6
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 5.0e-24 114.0 73 71.2
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 5.0e-24 114.0 73 72.6
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 8.6e-24 113.2 75 69.3
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 8.6e-24 113.2 73 74.0
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.1e-23 112.8 75 72.0
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 1.5e-23 112.5 72 72.2
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 1.5e-23 112.5 75 70.7
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.5e-23 112.5 75 66.7
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.9e-23 112.1 72 69.4
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.9e-23 112.1 75 65.3
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.9e-23 112.1 75 69.3
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 2.5e-23 111.7 75 69.3
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 2.5e-23 111.7 73 72.6
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 3.3e-23 111.3 73 72.6
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 3.3e-23 111.3 75 69.3
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 3.3e-23 111.3 70 72.9
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 4.3e-23 110.9 75 70.7
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 5.6e-23 110.5 75 62.7
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 5.6e-23 110.5 72 70.8
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 7.3e-23 110.2 73 71.2
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 7.3e-23 110.2 73 71.2
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 7.3e-23 110.2 73 68.5
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 7.3e-23 110.2 75 68.0
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 9.5e-23 109.8 74 68.9
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 9.5e-23 109.8 73 71.2
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 9.5e-23 109.8 71 70.4
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 1.2e-22 109.4 73 65.8
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.2e-22 109.4 70 71.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 1.6e-22 109.0 73 69.9
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.1e-22 108.6 73 68.5
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 2.1e-22 108.6 71 67.6
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.1e-22 108.6 67 74.6
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 2.1e-22 108.6 73 69.9
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.8e-22 108.2 74 67.6
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 3.6e-22 107.8 73 69.9
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.6e-22 107.8 79 65.8
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.6e-22 107.8 75 66.7
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 6.2e-22 107.1 65 76.9
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 8.1e-22 106.7 61 78.7
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 8.1e-22 106.7 73 67.1
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.1e-21 106.3 75 62.7
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.1e-21 106.3 72 66.7
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.1e-21 106.3 69 71.0
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.1e-21 106.3 73 68.5
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.8e-21 105.5 72 66.7
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.8e-21 105.5 69 69.6
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.3e-21 105.1 61 77.0
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 3.1e-21 104.8 65 72.3
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 4.0e-21 104.4 72 66.7
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 4.0e-21 104.4 66 72.7
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 6.8e-21 103.6 73 64.4
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 6.8e-21 103.6 73 63.0
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 8.9e-21 103.2 73 64.4
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.2e-20 102.8 73 64.4
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.2e-20 102.8 78 64.1
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 1.2e-20 102.8 73 64.4
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.2e-20 102.8 69 63.8
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.0e-20 102.1 69 66.7
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.4e-20 101.3 67 65.7
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 4.4e-20 100.9 74 60.8
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 4.4e-20 100.9 64 70.3
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 5.8e-20 100.5 73 64.4
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.3e-19 99.4 70 65.7
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 2.2e-19 98.6 60 75.0
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.9e-19 98.2 72 61.1
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 6.4e-19 97.1 54 81.5
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 6.4e-19 97.1 60 73.3
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 6.4e-19 97.1 57 78.9
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 8.3e-19 96.7 75 58.7
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.4e-18 95.9 73 61.6
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 1.4e-18 95.9 69 62.3
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.9e-18 95.5 69 63.8
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.9e-18 95.5 69 63.8
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.9e-18 95.5 69 63.8
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.9e-18 95.5 69 63.8
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.9e-18 95.5 73 60.3
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.9e-18 95.5 71 62.0
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.9e-18 95.5 71 62.0
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 2.4e-18 95.1 73 60.3
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 3.2e-18 94.7 73 60.3
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 3.2e-18 94.7 73 60.3
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 3.2e-18 94.7 73 60.3
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 3.2e-18 94.7 73 60.3
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 5.4e-18 94.0 57 73.7
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.1e-17 92.0 72 55.6
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.7e-17 91.7 72 55.6
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 3.5e-17 91.3 53 75.5
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 7.8e-17 90.1 65 63.1
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.0e-16 89.7 55 74.5
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.3e-16 89.4 66 59.1
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.3e-16 89.4 64 60.9
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 3.0e-16 88.2 65 61.5
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.5e-15 85.1 67 53.7
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 5.6e-15 84.0 70 50.0
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 7.3e-15 83.6 65 56.9
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.6e-14 82.4 59 59.3
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 3.8e-11 71.2 59 52.5
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 2.4e-10 68.6 64 51.6
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 2.1e-09 65.5 65 46.2
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 2.7e-09 65.1 47 61.7
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.3e-08 62.8 64 46.9
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.5e-07 58.5 73 39.7


User provided reference genes

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