Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034746 Chenopodium quinoa HOM05D007425 ORTHO05D009334 1.1e-72 276.6 144 100.0
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 1.2e-61 240.0 139 89.9
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 9.9e-37 157.1 145 62.8
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 7.1e-27 124.4 149 56.4
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 1.6e-15 86.7 147 40.1
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 4.8e-15 85.1 141 42.6
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 8.1e-15 84.3 130 43.1
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 1.8e-14 83.2 155 40.6
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 5.3e-14 81.6 142 39.4
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 6.9e-14 81.3 62 69.4
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 6.9e-14 81.3 117 42.7
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 6.9e-14 81.3 84 56.0
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 9.0e-14 80.9 86 53.5
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 1.5e-13 80.1 139 41.7
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 1.5e-13 80.1 138 39.9
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 2.0e-13 79.7 138 44.2
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 2.0e-13 79.7 138 44.2
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 2.0e-13 79.7 138 44.2
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 2.6e-13 79.3 155 39.4
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 2.6e-13 79.3 150 40.0
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 3.4e-13 79.0 73 58.9
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 3.4e-13 79.0 73 58.9
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 3.4e-13 79.0 146 43.2
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 5.8e-13 78.2 148 39.2
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 7.6e-13 77.8 113 43.4
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 1.3e-12 77.0 80 53.8
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 1.3e-12 77.0 94 51.1
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 1.3e-12 77.0 148 38.5
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 1.3e-12 77.0 103 46.6
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 1.7e-12 76.6 93 50.5
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 1.7e-12 76.6 107 43.9
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 2.9e-12 75.9 148 39.2
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 3.8e-12 75.5 136 44.9
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 3.8e-12 75.5 105 46.7
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 4.9e-12 75.1 132 42.4
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 4.9e-12 75.1 150 39.3
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 6.4e-12 74.7 86 52.3
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 6.4e-12 74.7 64 60.9
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 6.4e-12 74.7 65 61.5
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 8.4e-12 74.3 154 37.7
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 8.4e-12 74.3 140 41.4
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 8.4e-12 74.3 140 40.7
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 1.4e-11 73.6 99 48.5
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 1.4e-11 73.6 139 40.3
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 1.4e-11 73.6 94 50.0
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 1.4e-11 73.6 135 42.2
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 1.4e-11 73.6 95 47.4
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 1.9e-11 73.2 123 44.7
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 2.4e-11 72.8 142 38.7
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 2.4e-11 72.8 138 39.1
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 3.2e-11 72.4 148 39.2
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 3.2e-11 72.4 148 39.2
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 4.2e-11 72.0 94 45.7
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 4.2e-11 72.0 94 45.7
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 4.2e-11 72.0 86 48.8
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 4.2e-11 72.0 128 39.8
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 5.4e-11 71.6 86 48.8
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 5.4e-11 71.6 76 50.0
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 7.1e-11 71.2 61 60.7
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 9.3e-11 70.9 80 55.0
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 9.3e-11 70.9 151 38.4
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 9.3e-11 70.9 70 55.7
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 1.6e-10 70.1 66 56.1
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 1.6e-10 70.1 70 55.7
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 1.6e-10 70.1 62 61.3
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 1.6e-10 70.1 106 41.5
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 3.5e-10 68.9 66 57.6
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 4.6e-10 68.6 95 44.2
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 6.0e-10 68.2 66 56.1
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 7.9e-10 67.8 140 40.0
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 7.9e-10 67.8 133 39.1
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 1.0e-09 67.4 72 55.6
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 1.0e-09 67.4 77 51.9
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 1.0e-09 67.4 58 58.6
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 1.3e-09 67.0 60 60.0
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 1.8e-09 66.6 131 38.2
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 2.3e-09 66.2 73 53.4
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 3.9e-09 65.5 73 53.4
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 3.9e-09 65.5 100 39.0
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 3.9e-09 65.5 75 52.0
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 5.1e-09 65.1 148 35.8
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 2.5e-08 62.8 99 42.4
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 4.3e-08 62.0 139 37.4
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 1.3e-07 60.5 139 33.8
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 1.6e-07 60.1 46 67.4
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 1.6e-07 60.1 141 36.2
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 4.8e-07 58.5 50 62.0
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 8.1e-07 57.8 129 38.0
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 1.1e-06 57.4 129 39.5
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 4.0e-06 55.5 105 39.0


User provided reference genes

Program Settings