Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.9e-198 695.7 360 100.0
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.0e-155 552.7 306 92.2
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 2.0e-126 456.4 364 65.1
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 2.4e-124 449.5 357 66.7
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 1.2e-107 394.0 361 59.3
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 2.8e-80 303.1 346 47.1
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 4.7e-80 302.4 365 47.4
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 1.1e-79 301.2 340 49.4
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 8.9e-79 298.1 352 45.2
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 3.4e-78 296.2 366 45.4
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 5.8e-78 295.4 368 47.3
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 2.2e-77 293.5 360 44.7
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 6.4e-77 292.0 362 45.3
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 6.4e-77 292.0 354 47.7
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 6.4e-77 292.0 316 52.8
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 3.2e-76 289.7 348 46.6
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 9.3e-76 288.1 338 47.0
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 1.6e-75 287.3 344 48.5
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 3.5e-75 286.2 314 47.1
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 3.5e-75 286.2 364 45.6
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.0e-74 284.6 340 47.1
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.0e-74 284.6 319 48.6
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.3e-74 284.3 352 44.3
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.7e-74 283.9 367 44.4
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 3.9e-74 282.7 345 45.8
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 3.9e-74 282.7 347 45.5
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 8.7e-74 281.6 362 43.9
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 8.7e-74 281.6 328 47.0
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 1.1e-73 281.2 365 44.7
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 3.3e-73 279.6 370 45.1
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 4.3e-73 279.3 351 46.2
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 5.6e-73 278.9 363 44.4
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 1.6e-72 277.3 348 44.3
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 2.1e-72 276.9 344 45.1
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 2.8e-72 276.6 332 47.0
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 3.6e-72 276.2 322 46.3
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 3.6e-72 276.2 320 46.6
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 8.1e-72 275.0 327 46.2
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.8e-71 273.9 325 46.8
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 3.1e-71 273.1 334 45.2
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 4.0e-71 272.7 325 44.9
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.2e-70 271.2 325 46.8
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 2.6e-70 270.0 332 45.2
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 2.6e-70 270.0 337 44.5
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 5.8e-70 268.9 337 43.9
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 2.9e-69 266.5 339 44.5
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.4e-69 265.4 324 46.6
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.4e-69 265.4 324 46.6
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.4e-69 265.4 324 46.6
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 8.4e-69 265.0 356 43.5
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 8.4e-69 265.0 353 44.5
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 1.4e-68 264.2 343 43.1
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 1.9e-68 263.8 354 42.9
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 2.4e-68 263.5 324 46.3
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 2.4e-68 263.5 370 43.0
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 1.2e-67 261.2 346 44.2
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 4.6e-67 259.2 339 44.2
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 7.9e-67 258.5 353 44.5
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 1.7e-66 257.3 342 42.4
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 2.3e-66 256.9 340 42.9
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 5.1e-66 255.8 339 44.8
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 5.1e-66 255.8 339 44.8
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 5.1e-66 255.8 339 44.8
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 3.3e-65 253.1 367 42.8
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 5.6e-65 252.3 363 42.1
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.3e-64 251.1 352 43.8
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 2.8e-64 250.0 347 43.2
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 3.6e-64 249.6 344 43.9
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 4.8e-64 249.2 343 43.7
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 4.8e-64 249.2 335 41.8
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 1.4e-63 247.7 342 42.4
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 2.4e-63 246.9 348 42.5
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 4.0e-63 246.1 309 44.3
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 5.3e-63 245.7 342 40.9
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 5.3e-63 245.7 342 40.9
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 6.9e-63 245.4 337 43.9
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 5.8e-62 242.3 307 40.7
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 1.3e-61 241.1 364 39.8
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 1.3e-61 241.1 337 43.3
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 1.7e-61 240.7 350 42.0
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 2.9e-61 240.0 337 43.3
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 6.4e-61 238.8 361 38.5
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 8.4e-61 238.4 338 42.3
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 2.4e-60 236.9 361 38.5
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 8.7e-58 228.4 347 41.2
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 1.1e-57 228.0 363 40.5
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 2.1e-56 223.8 349 39.3
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 2.4e-55 220.3 360 38.3
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 6.9e-55 218.8 315 39.4
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 1.2e-54 218.0 303 44.9
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.0e-53 214.9 262 48.5
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 1.1e-52 211.5 318 41.8
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 2.5e-52 210.3 328 40.5
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 5.5e-52 209.1 337 40.1
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 1.2e-51 208.0 352 39.5
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 1.0e-50 204.9 313 42.5
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 5.1e-50 202.6 313 40.6
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 1.3e-48 198.0 341 38.4
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 2.0e-46 190.7 197 49.2
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.5e-41 174.5 250 40.8
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 4.8e-40 169.5 319 34.5
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 2.4e-39 167.2 253 39.1
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 2.4e-39 167.2 343 35.0
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 2.0e-38 164.1 341 31.7
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.6e-38 163.7 263 41.1
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 2.9e-29 133.7 355 30.7
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 5.0e-29 132.9 131 46.6
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 6.5e-29 132.5 172 43.0
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 1.4e-28 131.3 174 40.8
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 1.4e-28 131.3 165 42.4
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 1.9e-28 131.0 320 30.9
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 5.5e-28 129.4 328 32.3
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 9.4e-28 128.6 270 33.0
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.2e-27 128.3 130 50.0
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.6e-27 127.9 157 41.4
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.8e-23 114.4 104 51.0
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 5.0e-21 106.3 89 51.7
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 1.0e-13 82.0 123 40.7
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 8.5e-13 79.0 108 33.3
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 8.5e-13 79.0 108 33.3
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-12 78.6 108 41.7
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-12 78.6 107 40.2
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-12 78.6 108 41.7
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-12 78.6 108 39.8
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-12 78.6 107 40.2
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 4.2e-12 76.6 107 41.1
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 5.5e-12 76.3 107 40.2
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 7.2e-12 75.9 98 33.7
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 4.7e-11 73.2 61 59.0
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 2.0e-09 67.8 201 27.4
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 2.6e-09 67.4 156 28.2
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 1.7e-08 64.7 97 37.1
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 7.7e-06 55.8 75 37.3


User provided reference genes

Program Settings