Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034711 Chenopodium quinoa HOM05D000045 ORTHO05D000067 5.4e-59 230.7 110 100.0
AUR62017476 Chenopodium quinoa HOM05D000045 ORTHO05D000611 6.8e-46 187.2 160 62.5
EL10Ac1g01868 Beta vulgaris HOM05D000045 ORTHO05D000067 5.8e-37 157.5 150 56.7
EL10Ac7g17614 Beta vulgaris HOM05D000045 ORTHO05D000611 6.4e-36 154.1 161 52.8
EL10Ac7g16467 Beta vulgaris HOM05D000045 ORTHO05D000067 8.3e-36 153.7 146 56.8
EL10Ac2g03365 Beta vulgaris HOM05D000045 ORTHO05D019836 2.1e-31 139.0 158 50.6
EL10Ac2g03509 Beta vulgaris HOM05D000045 ORTHO05D000067 5.8e-29 131.0 134 54.5
EL10Ac6g14532 Beta vulgaris HOM05D000045 ORTHO05D000067 4.1e-27 124.8 74 77.0
TPR.G34153 Trifolium pratense HOM05D000045 ORTHO05D000067 1.2e-21 106.7 158 38.6
Os10g0571900 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D000067 1.5e-21 106.3 161 39.8
TPR.G23616 Trifolium pratense HOM05D000045 ORTHO05D000067 2.0e-21 105.9 158 36.1
TPR.G22307 Trifolium pratense HOM05D000045 ORTHO05D000067 1.3e-20 103.2 155 36.1
TPR.G35603 Trifolium pratense HOM05D000045 ORTHO05D000067 1.7e-20 102.8 158 36.7
QL04p064028 Quercus lobata HOM05D000045 ORTHO05D000067 2.4e-19 99.0 161 37.3
QL07p011111 Quercus lobata HOM05D000045 ORTHO05D000067 2.4e-19 99.0 161 37.3
Sopen07g007600 Solanum pennellii HOM05D000045 ORTHO05D013823 9.2e-19 97.1 131 40.5
Peaxi162Scf00106g00017 Petunia axillaris HOM05D000045 ORTHO05D000067 2.1e-18 95.9 118 42.4
TWI18G0018 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 2.7e-18 95.5 160 33.8
TWI73G1051 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.6e-18 94.7 160 33.8
TPR.G9806 Trifolium pratense HOM05D000045 ORTHO05D000067 6.0e-18 94.4 159 34.6
Rhsim02G0126700 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.0e-17 93.6 161 36.0
CSS0045912 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.3e-17 93.2 160 33.8
CSS0007642 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.3e-17 92.4 160 33.8
CSS0017425 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.9e-17 91.7 160 33.1
TPR.G22309 Trifolium pratense HOM05D000045 ORTHO05D000067 3.9e-17 91.7 74 54.1
CSS0002394 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.1e-16 90.1 142 37.3
RhsimUnG0130200 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.9e-16 89.4 161 34.8
TPR.G39876 Trifolium pratense HOM05D000045 ORTHO05D000067 1.9e-16 89.4 165 32.7
Actinidia02450 Actinidia chinensis HOM05D000045 ORTHO05D000067 3.3e-16 88.6 160 35.0
TWI34G1179 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 4.3e-16 88.2 161 31.1
TWI34G0702 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 5.6e-16 87.8 161 31.1
TWI79G0323 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 5.6e-16 87.8 75 56.0
CiPaw.09G035500 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.6e-15 86.3 160 32.5
Rhsim03G0118100 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.6e-15 86.3 74 54.1
TWI34G0182 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 2.1e-15 85.9 161 29.2
QL03p055126 Quercus lobata HOM05D000045 ORTHO05D000611 6.2e-15 84.3 161 34.8
Rhsim12G0018100 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.1e-15 84.0 161 33.5
TPR.G40442 Trifolium pratense HOM05D000045 ORTHO05D000067 1.1e-14 83.6 160 33.1
TWI74G1247 Tripterygium wilfordii HOM05D000045 ORTHO05D012015 1.1e-14 83.6 151 33.1
EL10Ac9g20884 Beta vulgaris HOM05D000045 ORTHO05D004773 1.4e-14 83.2 54 74.1
Ciclev10030168m.g Citrus clementina HOM05D000045 ORTHO05D000067 1.4e-14 83.2 117 37.6
Rhsim10G0174800 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.8e-14 82.8 161 32.3
TPR.G28057 Trifolium pratense HOM05D000045 ORTHO05D000067 4.0e-14 81.6 161 29.8
TWI73G0928 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 5.2e-14 81.3 160 32.5
CSS0017444 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 6.9e-14 80.9 161 33.5
CSS0023299 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.2e-13 80.1 161 31.7
CAN.G915.12 Capsicum annuum HOM05D000045 ORTHO05D000067 1.2e-13 80.1 160 32.5
Rhsim05G0213300 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.0e-13 79.3 160 33.1
TPR.G39279 Trifolium pratense HOM05D000045 ORTHO05D000067 2.0e-13 79.3 155 29.7
CSS0047126 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.6e-13 79.0 161 30.4
Peaxi162Scf01514g00020 Petunia axillaris HOM05D000045 ORTHO05D000067 5.8e-13 77.8 159 32.7
CSS0003195 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 7.6e-13 77.4 161 30.4
CSS0025579 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 7.6e-13 77.4 161 30.4
TPR.G18125 Trifolium pratense HOM05D000045 ORTHO05D000067 7.6e-13 77.4 161 29.2
CSS0041074 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.9e-13 77.0 160 30.6
CSS0041653 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.3e-12 76.6 161 30.4
COL.COLO4_12964 Corchorus olitorius HOM05D000045 ORTHO05D000067 1.7e-12 76.3 74 45.9
QL93p0073_0477 Quercus lobata HOM05D000045 ORTHO05D000067 2.2e-12 75.9 103 38.8
TWI56G0528 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 2.2e-12 75.9 158 28.5
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 2.9e-12 75.5 161 30.4
CSS0000341 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.9e-12 75.5 161 29.8
CSS0004211 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.9e-12 75.5 161 29.8
CSS0014838 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.9e-12 75.5 161 29.8
PSO063G3173 Papaver somniferum HOM05D000045 ORTHO05D000067 2.9e-12 75.5 160 30.6
CSS0018197 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.8e-12 75.1 160 30.0
COL.COLO4_06875 Corchorus olitorius HOM05D000045 ORTHO05D000067 3.8e-12 75.1 160 30.0
TWI31G0204 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.8e-12 75.1 133 33.8
COL.COLO4_29562 Corchorus olitorius HOM05D000045 ORTHO05D000067 4.9e-12 74.7 74 45.9
COL.COLO4_34382 Corchorus olitorius HOM05D000045 ORTHO05D000067 4.9e-12 74.7 82 41.5
COL.COLO4_20854 Corchorus olitorius HOM05D000045 ORTHO05D000611 6.4e-12 74.3 157 30.6
CANSAT35G0619 Cannabis sativa HOM05D000045 ORTHO05D000067 8.4e-12 73.9 158 28.5
TPR.G19376 Trifolium pratense HOM05D000045 ORTHO05D000611 8.4e-12 73.9 123 35.0
TAR340G0001 Trochodendron aralioides HOM05D000045 ORTHO05D004773 8.4e-12 73.9 159 30.2
CSS0005964 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.1e-11 73.6 74 44.6
CAN.G1195.7 Capsicum annuum HOM05D000045 ORTHO05D000611 1.1e-11 73.6 160 30.0
TPR.G34286 Trifolium pratense HOM05D000045 ORTHO05D000067 1.1e-11 73.6 158 29.7
Rhsim01G0226000 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.4e-11 73.2 160 31.2
TPR.G18992 Trifolium pratense HOM05D000045 ORTHO05D000067 1.4e-11 73.2 69 46.4
TWI34G1161 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 1.4e-11 73.2 160 29.4
CSS0021123 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.9e-11 72.8 160 30.0
COL.COLO4_25082 Corchorus olitorius HOM05D000045 ORTHO05D004773 2.4e-11 72.4 149 31.5
Rhsim08G0140300 Rhododendron simsii HOM05D000045 ORTHO05D004773 2.4e-11 72.4 57 56.1
Lj4g0018346 Lotus japonicus HOM05D000439 ORTHO05D002302 3.2e-11 72.0 125 32.8
Rhsim11G0165300 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.2e-11 72.0 74 45.9
Os01g0852650 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D000067 5.4e-11 71.2 158 26.6
PSO017G1459 Papaver somniferum HOM05D000045 ORTHO05D000067 5.4e-11 71.2 135 31.9
TWI31G1472 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 5.4e-11 71.2 67 47.8
CANSAT21G0455 Cannabis sativa HOM05D000045 ORTHO05D000067 7.1e-11 70.9 75 44.0
CANSAT64G2947 Cannabis sativa HOM05D000045 ORTHO05D000067 7.1e-11 70.9 160 28.8
HPP92_013275 Vanilla planifolia HOM05D000045 ORTHO05D000067 7.1e-11 70.9 158 27.8
CANSAT11G1643 Cannabis sativa HOM05D000045 ORTHO05D000611 1.2e-10 70.1 160 28.8
TWI60G0916 Tripterygium wilfordii HOM05D000045 ORTHO05D004773 1.2e-10 70.1 74 41.9
Medtr7g074790 Medicago truncatula HOM05D000045 ORTHO05D030148 1.6e-10 69.7 140 31.4
QL01p039642 Quercus lobata HOM05D000045 ORTHO05D000067 1.6e-10 69.7 71 49.3
QL04p049080 Quercus lobata HOM05D000045 ORTHO05D000067 1.6e-10 69.7 71 49.3
CANSAT01G2577 Cannabis sativa HOM05D000045 ORTHO05D000067 2.1e-10 69.3 160 31.9
MBI18_g20362_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 2.7e-10 68.9 146 30.8
Medtr0402s0040 Medicago truncatula HOM05D000045 ORTHO05D000611 2.7e-10 68.9 74 44.6
TPR.G16952 Trifolium pratense HOM05D000045 ORTHO05D000067 3.5e-10 68.6 161 28.6
CiPaw.13G057900 Carya illinoinensis HOM05D000045 ORTHO05D000611 7.8e-10 67.4 135 29.6
Lj1g0012784 Lotus japonicus HOM05D000045 ORTHO05D000067 1.0e-09 67.0 110 35.5
Medtr4g102720 Medicago truncatula HOM05D000045 ORTHO05D000611 1.0e-09 67.0 124 31.5
Ah.11g042870 Amaranthus hybridus HOM05D000045 ORTHO05D000611 1.3e-09 66.6 75 46.7
COL.COLO4_20433 Corchorus olitorius HOM05D000045 ORTHO05D000067 1.3e-09 66.6 158 27.2
Rhsim07G0060100 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.3e-09 66.6 55 56.4
Psat5g221600 Pisum sativum HOM05D000045 ORTHO05D000067 1.7e-09 66.2 160 27.5
Atru.chr8.1689 Acer truncatum HOM05D000045 ORTHO05D000067 2.3e-09 65.9 57 49.1
Lalb_Chr12g0207491 Lupinus albus HOM05D000045 ORTHO05D004773 3.0e-09 65.5 73 41.1
Os07g0615900 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D000067 3.0e-09 65.5 160 29.4
TWI31G0562 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.0e-09 65.5 61 47.5
CSS0047463 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D009008 3.9e-09 65.1 74 44.6
RcHm_v2.0_Chr6g0276821 Rosa chinensis HOM05D000045 ORTHO05D000067 6.6e-09 64.3 83 37.3
PSO017G2392 Papaver somniferum HOM05D000045 ORTHO05D000067 1.1e-08 63.5 72 41.7
TAR483G0002 Trochodendron aralioides HOM05D000045 ORTHO05D000067 1.1e-08 63.5 159 27.7
PSO447G0378 Papaver somniferum HOM05D000045 ORTHO05D000067 1.5e-08 63.2 75 40.0
QL06p047907 Quercus lobata HOM05D000045 ORTHO05D000067 1.5e-08 63.2 83 41.0
TPR.G26331 Trifolium pratense HOM05D000045 ORTHO05D000067 1.9e-08 62.8 55 50.9
MBI02_g00245_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 3.3e-08 62.0 74 40.5
PSO017G6906 Papaver somniferum HOM05D000045 ORTHO05D000067 4.3e-08 61.6 75 38.7
TWI18G0528 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.3e-08 61.6 121 35.5
TWI18G0680 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.3e-08 61.6 121 35.5
TWI18G0744 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 4.3e-08 61.6 121 35.5
Aqoxy6G02606 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 7.3e-08 60.8 161 29.2
TAR511G0003 Trochodendron aralioides HOM05D000045 ORTHO05D000067 7.3e-08 60.8 159 27.0
Aqoxy4G01663 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 9.6e-08 60.5 161 29.8
MBI09_g01019_MAGBIO Magnolia biondii HOM05D002346 ORTHO05D004773 1.3e-07 60.1 74 37.8
COL.COLO4_16646 Corchorus olitorius HOM05D000045 ORTHO05D000067 1.6e-07 59.7 110 30.9
FvH4_3g31442 Fragaria vesca HOM05D000045 ORTHO05D000067 1.6e-07 59.7 160 28.8
Peaxi162Scf00049g00076 Petunia axillaris HOM05D000045 ORTHO05D000067 1.6e-07 59.7 152 27.6
TWI38G2251 Tripterygium wilfordii HOM05D000045 ORTHO05D016633 1.6e-07 59.7 125 32.0
TWI53G0115 Tripterygium wilfordii HOM05D000045 ORTHO05D004773 1.6e-07 59.7 74 35.1
TWI63G0390 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 1.6e-07 59.7 121 33.1
Aqoxy5G02149 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 2.8e-07 58.9 161 28.6
CSS0042373 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.8e-07 58.9 161 27.3
QL04p026370 Quercus lobata HOM05D000045 ORTHO05D000611 2.8e-07 58.9 142 28.2
CSS0040930 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.6e-07 58.5 154 27.9
CSS0041777 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.6e-07 58.5 155 28.4
Rhsim07G0170700 Rhododendron simsii HOM05D000045 ORTHO05D004773 3.6e-07 58.5 110 30.9
CSS0024514 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 6.2e-07 57.8 154 29.2
MBI13_g00891_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 6.2e-07 57.8 159 26.4
FvH4_2g38071 Fragaria vesca HOM05D000045 ORTHO05D000067 8.1e-07 57.4 96 31.2
QL02p073271 Quercus lobata HOM05D000045 ORTHO05D000067 8.1e-07 57.4 159 28.3
CSS0024773 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.4e-06 56.6 154 27.3
FvH4_4g15809 Fragaria vesca HOM05D000045 ORTHO05D000067 1.4e-06 56.6 110 31.8
Nitab4.5_0005138g0070 Nicotiana tabacum HOM05D015170 ORTHO05D000002 1.4e-06 56.6 73 38.4
Ciclev10003358m.g Citrus clementina HOM05D000045 ORTHO05D000067 2.4e-06 55.8 121 29.8
TPR.G5900 Trifolium pratense HOM05D000045 ORTHO05D000611 2.4e-06 55.8 53 49.1
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.0e-06 55.1 159 27.0
Solyc03g082435.1 Solanum lycopersicum HOM05D000045 ORTHO05D000067 5.3e-06 54.7 157 28.0
TPR.G38439 Trifolium pratense HOM05D000045 ORTHO05D000067 5.3e-06 54.7 54 40.7
TWI34G1121 Tripterygium wilfordii HOM05D000045 ORTHO05D004773 5.3e-06 54.7 63 39.7
TWI63G0656 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 6.9e-06 54.3 92 30.4
Ca_05742_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 9.0e-06 53.9 133 28.6
MBI09_g36554_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 9.0e-06 53.9 66 36.4
MBI15_g14881_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 9.0e-06 53.9 122 27.9
Prupe.1G194600 Prunus persica HOM05D000045 ORTHO05D000067 9.0e-06 53.9 155 24.5


User provided reference genes

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