Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 4.0e-124 449.9 778 100.0
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.4e-116 424.9 778 98.2
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 9.0e-84 315.8 184 79.9
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 1.3e-77 295.4 184 75.5
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 4.5e-67 260.4 181 69.1
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 4.5e-67 260.4 181 69.1
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 2.7e-64 251.1 184 65.8
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 6.0e-64 250.0 184 64.7
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 8.7e-63 246.1 184 66.3
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 1.1e-62 245.7 184 62.5
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 3.3e-62 244.2 184 62.0
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 4.3e-62 243.8 184 62.5
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 5.6e-62 243.4 184 64.7
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 5.6e-62 243.4 184 63.0
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 9.6e-62 242.7 184 66.8
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 8.2e-61 239.6 184 62.5
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 2.4e-60 238.0 184 60.3
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 3.1e-60 237.7 181 63.0
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 6.9e-60 236.5 181 63.0
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 9.0e-60 236.1 184 62.5
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 1.2e-59 235.7 184 62.0
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 2.0e-59 235.0 184 59.8
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 3.4e-59 234.2 184 61.4
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 1.3e-58 232.3 184 59.8
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 2.9e-58 231.1 181 61.3
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 2.9e-58 231.1 180 60.6
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 4.9e-58 230.3 181 58.6
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 8.4e-58 229.6 175 68.6
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 1.4e-57 228.8 185 60.5
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 1.4e-57 228.8 184 58.2
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 3.2e-57 227.6 181 60.8
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 4.2e-57 227.3 184 58.2
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 5.5e-57 226.9 184 56.5
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 9.3e-57 226.1 183 60.7
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 1.6e-56 225.3 184 59.2
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 2.1e-56 224.9 184 59.2
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 4.6e-56 223.8 184 59.8
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 4.6e-56 223.8 184 60.9
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 7.9e-56 223.0 181 60.2
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 7.9e-56 223.0 181 60.2
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 7.9e-56 223.0 186 58.1
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 1.0e-55 222.6 182 59.3
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 2.3e-55 221.5 179 60.9
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 5.1e-55 220.3 184 56.5
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 6.7e-55 219.9 184 59.2
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 2.5e-54 218.0 183 56.3
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 3.3e-54 217.6 185 57.8
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 3.3e-54 217.6 169 60.4
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 5.7e-54 216.9 173 60.1
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 7.4e-54 216.5 184 57.6
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 1.3e-53 215.7 178 59.0
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 1.4e-52 212.2 184 59.2
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 3.1e-52 211.1 186 58.6
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 5.3e-52 210.3 174 58.6
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 3.8e-50 204.1 186 55.9
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 6.5e-50 203.4 184 54.3
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 9.4e-49 199.5 191 53.4
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 1.8e-47 195.3 183 51.4
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 1.5e-46 192.2 183 53.0
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 5.7e-46 190.3 145 62.1
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 1.7e-45 188.7 181 50.3
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 8.2e-45 186.4 145 62.1
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 1.5e-43 182.2 181 50.8
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 4.5e-43 180.6 141 59.6
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 4.5e-43 180.6 181 48.6
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 5.0e-42 177.2 190 50.0
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 2.7e-40 171.4 175 50.9
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 2.3e-39 168.3 175 49.7
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 3.0e-39 167.9 117 65.8
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 6.7e-39 166.8 190 48.4
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 8.8e-39 166.4 140 56.4
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 4.4e-38 164.1 170 51.8
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.4e-36 159.1 102 80.4
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 5.3e-36 157.1 117 63.2
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 9.1e-36 156.4 163 47.9
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 2.6e-35 154.8 126 62.7
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 5.0e-34 150.6 107 65.4
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 2.1e-32 145.2 148 53.4
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 3.6e-32 144.4 119 58.8
MD07G1093100 Malus domestica HOM05D007595 ORTHO05D009570 2.0e-30 138.7 116 59.5
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 7.4e-30 136.7 118 56.8
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 1.3e-29 136.0 98 65.3
FAN18G0104 Fragaria x ananassa HOM05D007595 ORTHO05D009570 8.2e-29 133.3 100 63.0
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 1.8e-28 132.1 118 54.2
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 5.3e-28 130.6 116 54.3
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 1.2e-27 129.4 87 66.7
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 1.0e-26 126.3 116 54.3
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 6.5e-26 123.6 86 62.8
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 4.7e-24 117.5 78 65.4
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 1.4e-23 115.9 173 39.9
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 4.5e-19 100.9 100 50.0
Migut.I00272 Erythranthe guttata HOM05D007595 ORTHO05D009570 8.5e-18 96.7 92 51.1
Cpa.g.sc52.75 Carica papaya HOM05D007595 ORTHO05D009570 3.6e-16 91.3 88 46.6
Sabra14G0039700 Salix brachista HOM05D007595 ORTHO05D009570 2.3e-15 88.6 69 55.1
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 7.0e-12 77.0 96 39.6
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.7e-10 72.4 103 34.0
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 1.1e-09 69.7 162 24.1
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 4.2e-09 67.8 166 25.3
Zm00001eb367370 Zea mays HOM05D011046 ORTHO05D013342 4.2e-09 67.8 96 35.4
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 9.5e-09 66.6 100 33.0
ATR0665G577 Amborella trichopoda HOM05D007595 ORTHO05D009570 1.2e-08 66.2 100 34.0
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 1.6e-08 65.9 99 35.4
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 2.1e-08 65.5 100 33.0
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 2.8e-08 65.1 166 24.7
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 2.8e-08 65.1 164 25.6
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 3.6e-08 64.7 156 25.6
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 3.6e-08 64.7 156 25.6
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 6.1e-08 63.9 50 58.0
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.0e-07 63.2 103 31.1
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.0e-07 63.2 155 23.9
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 1.0e-07 63.2 100 32.0
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 1.4e-07 62.8 100 32.0
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 1.8e-07 62.4 135 25.9
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 2.3e-07 62.0 100 30.0
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 3.0e-07 61.6 142 29.6
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 4.0e-07 61.2 166 23.5
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 4.0e-07 61.2 100 30.0
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 4.0e-07 61.2 164 25.0
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 5.2e-07 60.8 140 27.1
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 5.2e-07 60.8 184 25.5
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.2e-07 60.8 159 25.2
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 6.8e-07 60.5 157 24.8
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 8.9e-07 60.1 157 24.8
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 1.2e-06 59.7 163 26.4
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 1.2e-06 59.7 85 37.6
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 1.5e-06 59.3 157 26.8
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 1.5e-06 59.3 176 26.1
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 2.0e-06 58.9 99 30.3
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 2.0e-06 58.9 137 27.0
DCAR_003433 Daucus carota HOM05D007291 ORTHO05D009038 2.0e-06 58.9 136 27.2
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 2.0e-06 58.9 143 27.3
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 2.6e-06 58.5 179 27.9
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 2.6e-06 58.5 114 30.7
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.6e-06 58.5 161 26.7
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 3.4e-06 58.2 148 23.6
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.4e-06 58.2 99 30.3
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 3.4e-06 58.2 99 30.3
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 3.4e-06 58.2 175 22.9
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 3.4e-06 58.2 99 31.3
GSVIVG01031674001 Vitis vinifera HOM05D000104 ORTHO05D009920 3.4e-06 58.2 99 31.3
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 4.4e-06 57.8 170 24.7
FAN10G2081 Fragaria x ananassa HOM05D000104 ORTHO05D009920 4.4e-06 57.8 100 32.0
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 4.4e-06 57.8 166 29.5
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 4.4e-06 57.8 99 31.3
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 4.4e-06 57.8 100 31.0
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 5.7e-06 57.4 178 24.2
Migut.L00784 Erythranthe guttata HOM05D007496 ORTHO05D009479 5.7e-06 57.4 135 29.6
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 7.5e-06 57.0 100 29.0
FAN03G1668 Fragaria x ananassa HOM05D000104 ORTHO05D009920 7.5e-06 57.0 100 32.0
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 9.8e-06 56.6 140 22.1
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 9.8e-06 56.6 99 32.3
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 9.8e-06 56.6 108 30.6
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 9.8e-06 56.6 161 26.7
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 9.8e-06 56.6 99 30.3


User provided reference genes

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