Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 4373.9 2190 100.0
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 4192.9 2192 96.1
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 3441.7 2193 79.2
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 3054.2 2210 70.4
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2804.6 2222 66.1
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2621.7 2237 62.4
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2551.9 2234 61.1
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2543.5 2227 60.1
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2537.3 2226 60.3
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2530.7 2229 60.1
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2512.6 2236 59.3
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2498.8 2228 60.2
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2495.7 2234 60.2
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2484.5 2236 59.3
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2478.4 2230 58.6
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2476.4 2228 58.6
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2471.8 2236 59.0
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2471.8 2249 58.6
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2468.0 2226 58.8
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2466.8 2230 58.5
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2456.8 2246 59.0
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2446.4 2214 58.5
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2439.5 2236 58.5
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2435.6 2254 58.3
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2431.8 2233 58.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2428.7 2228 58.5
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2428.3 2240 58.8
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2426.4 2243 58.8
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2402.9 2244 57.6
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2396.7 2224 58.0
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2387.8 2236 57.8
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2385.9 2232 57.4
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2381.7 2219 57.8
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2380.5 2234 57.8
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2377.1 2239 57.5
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2374.4 2233 57.5
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2371.7 2229 57.9
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2367.0 2227 57.7
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2367.0 2219 57.1
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2358.6 2229 57.2
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2355.9 2230 56.4
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2350.5 2228 55.9
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2350.5 2241 57.3
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2350.5 2229 57.0
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2350.1 2224 56.5
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2349.7 2256 56.9
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2345.5 2225 56.6
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2342.8 2239 56.4
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2341.6 2249 56.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2332.8 2218 56.7
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2332.4 2228 56.6
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2327.4 2230 57.0
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2326.2 2232 57.3
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2320.0 2220 57.1
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2320.0 2230 57.4
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2316.2 2224 57.4
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2313.1 2228 56.8
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2301.6 2251 55.3
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2300.8 2234 55.9
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2296.9 2228 56.9
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2294.2 2242 56.2
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2284.2 2228 56.2
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2270.7 2221 55.4
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2270.4 2250 55.2
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2268.4 2212 56.1
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2253.0 2213 55.7
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2251.9 2212 55.7
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2251.9 2212 55.7
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2249.2 2229 54.7
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2248.4 2221 55.3
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2244.9 2225 55.1
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2237.6 2214 55.6
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2237.6 2214 55.6
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2229.1 2212 55.6
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2228.4 2218 55.0
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2222.2 2211 55.6
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2150.9 2229 54.0
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2125.5 2214 54.1
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2090.5 2046 55.9
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2067.0 1831 60.2
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2063.5 1886 58.3
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2048.9 1826 59.6
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2033.8 2330 49.4
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2030.0 2316 49.9
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2025.8 1823 60.1
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1989.5 2218 50.5
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1988.8 2248 49.7
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1883.6 1721 59.6
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1814.7 2233 48.1
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1743.4 2382 43.9
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1678.3 1423 62.2
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1512.7 1715 49.5
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1405.6 2353 38.9
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1401.0 1369 57.4
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1388.2 2380 37.3
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1301.2 2250 37.8
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1287.3 2183 39.3
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1209.1 1123 58.9
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1167.1 1022 59.9
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1110.9 1197 52.5
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1087.0 943 61.0
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 1.6e-303 1047.3 1415 44.7
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 9.3e-296 1021.5 1060 52.7
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.2e-253 881.7 2453 30.2
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 2.2e-249 867.5 791 59.7
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 4.5e-242 843.2 1018 48.8
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 6.2e-223 779.6 856 49.9
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.5e-208 731.1 721 55.3
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.9e-204 716.8 1322 36.9
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 5.1e-161 573.9 995 39.0
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 7.7e-157 560.1 2497 25.7
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 3.7e-119 434.9 442 51.4
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 3.5e-101 375.2 377 53.3
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 1.2e-77 297.0 329 49.2
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 8.1e-74 284.3 288 57.6
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 3.3e-67 262.3 313 46.0
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 8.4e-63 247.7 744 28.4
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 3.0e-60 239.2 325 42.5
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-57 230.7 233 51.9
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 7.4e-51 208.0 174 64.9
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 6.9e-49 201.4 231 46.3
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 7.9e-45 188.0 282 40.1
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 1.4e-38 167.2 139 61.2
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.4e-33 150.6 95 77.9
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.4e-33 149.8 224 40.2
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 8.5e-31 141.4 484 26.4
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.3e-26 127.5 293 31.7
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 6.3e-26 125.2 95 64.2
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 1.7e-23 117.1 146 45.2
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 1.5e-22 114.0 104 61.5
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 2.1e-21 110.2 93 64.5
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 6.8e-20 105.1 1051 20.4
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.6e-13 84.0 110 40.9


User provided reference genes

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