Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.1e-104 380.6 186 100.0
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.3e-102 375.6 186 98.4
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 4.8e-92 341.3 187 89.3
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.9e-88 329.3 187 84.0
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.3e-86 323.2 187 82.4
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 6.9e-75 284.3 187 73.8
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.0e-74 282.7 186 72.0
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.0e-73 280.4 186 72.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 5.5e-72 274.6 182 72.5
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 5.5e-72 274.6 187 72.2
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.6e-71 273.1 185 72.4
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 2.7e-71 272.3 187 72.7
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 3.0e-70 268.9 187 69.5
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.1e-69 266.9 187 69.5
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 4.3e-69 265.0 184 68.5
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 9.7e-69 263.8 184 69.6
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 2.2e-68 262.7 187 69.5
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 4.8e-68 261.5 187 69.0
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.1e-67 260.4 187 71.1
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.1e-67 260.4 184 66.8
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.8e-67 259.6 184 67.9
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 2.4e-67 259.2 184 69.0
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.1e-67 258.8 187 69.0
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 3.1e-67 258.8 187 67.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.1e-67 258.8 193 67.4
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 5.3e-67 258.1 184 67.4
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 6.9e-67 257.7 184 67.4
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 6.9e-67 257.7 184 67.4
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 9.0e-67 257.3 184 66.8
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 1.2e-66 256.9 187 67.4
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 1.5e-66 256.5 184 66.8
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.6e-66 255.8 187 68.4
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 7.7e-66 254.2 187 67.4
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 1.3e-65 253.4 184 65.8
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.2e-65 252.7 187 66.8
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.2e-65 252.7 187 66.8
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 2.9e-65 252.3 186 67.2
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 3.8e-65 251.9 184 64.7
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.0e-65 251.5 187 67.9
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 5.0e-65 251.5 184 66.3
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 5.0e-65 251.5 184 66.3
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 5.0e-65 251.5 184 66.3
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 8.5e-65 250.8 187 66.8
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.1e-64 250.4 187 65.2
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.9e-64 249.6 187 66.3
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.9e-64 249.6 185 64.3
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 3.2e-64 248.8 179 67.6
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 4.2e-64 248.4 184 65.8
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 4.2e-64 248.4 182 67.0
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 5.5e-64 248.1 187 67.9
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 7.2e-64 247.7 187 66.3
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 7.2e-64 247.7 182 65.4
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 7.2e-64 247.7 185 63.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 7.2e-64 247.7 182 65.9
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 9.4e-64 247.3 182 67.6
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 9.4e-64 247.3 182 64.3
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 9.4e-64 247.3 185 65.4
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.6e-63 246.5 181 64.1
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 2.1e-63 246.1 182 67.0
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 2.1e-63 246.1 184 65.2
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.1e-63 246.1 187 66.3
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 2.1e-63 246.1 182 63.7
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 2.7e-63 245.7 187 66.8
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 4.6e-63 245.0 182 66.5
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.0e-62 243.8 183 67.2
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 1.4e-62 243.4 187 64.2
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.4e-62 243.4 185 64.3
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.4e-62 243.4 184 63.0
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.8e-62 243.0 184 66.8
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.8e-62 243.0 184 61.4
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.3e-62 242.7 187 66.3
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 3.0e-62 242.3 184 63.6
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.9e-62 241.9 150 76.0
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 5.1e-62 241.5 187 66.3
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 5.1e-62 241.5 184 65.8
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 6.7e-62 241.1 187 63.6
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.0e-61 239.6 180 66.7
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.5e-61 239.2 208 60.1
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 3.3e-61 238.8 187 63.6
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 7.4e-61 237.7 184 64.1
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 7.4e-61 237.7 182 63.7
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 9.7e-61 237.3 181 65.7
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 9.7e-61 237.3 189 64.0
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 9.7e-61 237.3 185 64.3
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.7e-60 236.5 180 66.1
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.2e-60 236.1 186 61.3
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 3.7e-60 235.3 185 63.8
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.4e-59 233.4 184 63.0
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.4e-59 232.6 184 60.9
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.5e-58 229.9 186 60.2
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.0e-58 229.6 187 60.4
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 2.6e-58 229.2 184 63.6
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 3.4e-58 228.8 171 65.5
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 4.5e-58 228.4 186 60.2
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 5.9e-58 228.0 184 62.0
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 7.7e-58 227.6 187 59.9
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.0e-57 227.3 184 61.4
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.7e-57 226.5 187 60.4
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.1e-56 223.8 189 59.8
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.4e-56 223.4 189 59.3
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 2.5e-56 222.6 184 58.7
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 5.5e-56 221.5 189 58.7
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 6.1e-55 218.0 182 56.0
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 1.0e-54 217.2 189 57.7
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 1.0e-54 217.2 189 57.7
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.8e-54 216.5 167 65.3
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.9e-54 215.3 148 68.9
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 6.7e-54 214.5 166 63.3
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.3e-52 210.3 167 62.3
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.1e-51 207.2 187 59.9
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.8e-51 206.5 148 64.2
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.3e-51 204.9 168 62.5
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.2e-50 203.8 182 53.3
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.2e-50 203.8 182 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.3e-49 200.3 182 52.2
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.5e-48 196.1 201 52.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.2e-47 193.7 182 50.5
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.3e-46 189.5 189 54.5
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 2.3e-46 189.5 182 48.9
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.1e-45 187.2 198 53.0
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 7.4e-45 184.5 183 53.6
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.8e-43 179.9 148 60.8
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.2e-42 177.2 184 46.2
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 3.5e-42 175.6 150 60.0
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.9e-41 172.6 187 50.8
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.2e-39 167.2 187 52.9
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.5e-37 160.2 156 56.4
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 9.7e-37 157.5 104 72.1
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 4.1e-35 152.1 114 63.2
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.0e-30 136.0 104 59.6
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 7.7e-26 121.3 116 53.4
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.3e-25 119.8 98 60.2
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 9.5e-24 114.4 167 35.9
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 2.8e-23 112.8 153 40.5
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 4.7e-23 112.1 72 73.6
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 4.5e-18 95.5 172 30.8
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.1e-16 90.9 79 58.2
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 7.3e-16 88.2 62 64.5
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 9.5e-16 87.8 72 55.6
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.0e-14 84.3 83 62.7
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 8.3e-12 74.7 175 28.0
Ah.02g118500 Amaranthus hybridus HOM05D047171 ORTHO05D038202 3.6e-07 59.3 36 80.6
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 3.1e-06 56.2 38 63.2


User provided reference genes

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