Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 0.0e+00 2407.5 1250 100.0
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 0.0e+00 2236.1 1316 90.5
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 0.0e+00 1295.8 1315 59.2
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 0.0e+00 1281.9 1333 59.3
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 8.6e-312 1074.3 1379 50.7
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.9e-217 760.0 1402 40.6
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 3.6e-212 743.0 1446 39.8
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.5e-205 720.3 1310 39.6
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.3e-204 718.0 1387 39.3
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.3e-198 698.0 1453 39.0
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 8.2e-196 688.7 1466 38.3
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 9.0e-195 685.3 1449 37.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.2e-194 684.9 1431 37.5
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 2.0e-194 684.1 1477 37.1
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 4.5e-194 682.9 1470 37.3
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 5.9e-194 682.6 1435 38.3
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 6.5e-193 679.1 1408 38.3
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 8.5e-193 678.7 1435 38.3
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.8e-190 671.0 1438 38.0
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.8e-190 671.0 1414 37.9
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 8.7e-190 668.7 1414 38.3
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 1.1e-189 668.3 1489 37.5
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 2.2e-185 654.1 1400 38.1
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 5.0e-185 652.9 1465 37.7
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 3.6e-183 646.7 1418 37.1
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 4.4e-181 639.8 1375 37.1
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 7.4e-181 639.0 1380 37.0
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 4.8e-180 636.3 1331 37.0
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 1.8e-179 634.4 1413 37.3
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 4.1e-179 633.3 1427 36.2
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 6.9e-179 632.5 1394 36.7
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.3e-177 628.2 1407 36.3
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 5.2e-174 616.3 1429 36.5
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 8.8e-174 615.5 1414 35.7
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 9.7e-173 612.1 1248 39.0
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 2.2e-172 610.9 1362 37.2
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 2.8e-172 610.5 1291 37.4
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 4.8e-172 609.8 1404 37.0
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 5.3e-171 606.3 1412 35.9
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 7.0e-171 605.9 1396 36.0
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.6e-170 604.0 1375 36.1
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 4.5e-170 603.2 1269 36.6
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 8.5e-169 599.0 1255 37.8
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 4.2e-168 596.7 1344 37.0
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 4.2e-168 596.7 1402 36.2
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 7.2e-168 595.9 1382 36.8
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.2e-167 595.1 1295 36.8
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 2.1e-167 594.3 1423 35.1
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 4.7e-167 593.2 1414 34.5
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 8.0e-167 592.4 1315 36.9
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.0e-166 592.0 1342 35.9
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.8e-166 591.3 1410 35.1
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.5e-165 588.2 1412 36.6
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 9.7e-165 585.5 1389 36.3
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 2.2e-164 584.3 1369 35.6
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.2e-164 584.3 1357 35.7
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 3.7e-164 583.6 1390 35.7
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 1.1e-163 582.0 1134 38.3
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.1e-163 582.0 1395 36.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.2e-162 578.6 1394 34.9
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.6e-162 578.2 1303 36.1
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.6e-162 578.2 1237 37.4
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 3.5e-162 577.0 1420 34.4
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.3e-161 575.1 1179 37.2
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 2.1e-159 567.8 1124 37.9
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 4.0e-158 563.5 1236 36.9
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.8e-158 562.8 1246 35.6
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 8.8e-158 562.4 1236 36.1
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.5e-157 561.6 1188 36.4
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.7e-156 558.1 1243 36.7
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.5e-154 550.4 1288 35.0
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.9e-152 544.7 1234 35.7
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.4e-150 538.5 1368 35.5
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.5e-149 535.0 1376 35.8
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 6.6e-145 519.6 1234 34.8
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 2.6e-141 507.7 1230 35.0
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.7e-140 505.0 1276 35.2
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.3e-137 495.4 1332 34.8
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.7e-137 495.0 1323 34.8
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 8.6e-137 492.7 1418 31.9
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 4.0e-134 483.8 1297 34.5
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 6.8e-134 483.0 1327 33.5
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 2.6e-133 481.1 1333 33.2
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.6e-130 471.9 982 37.8
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.7e-129 468.4 1239 34.5
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 3.9e-129 467.2 1291 33.1
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 3.9e-129 467.2 1229 34.5
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 8.6e-129 466.1 1015 36.7
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.1e-128 465.7 1324 33.3
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.8e-127 461.1 1307 32.7
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 2.8e-127 461.1 1210 33.6
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.6e-127 460.7 1208 33.9
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 3.6e-127 460.7 1208 33.9
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 3.1e-126 457.6 1207 33.9
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 3.9e-121 440.7 1321 32.4
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.3e-116 425.6 581 48.2
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.9e-115 421.8 1168 32.5
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.4e-108 396.4 1156 31.6
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.4e-107 393.7 1156 31.9
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 2.2e-92 345.1 626 41.4
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.8e-92 344.4 610 38.7
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 8.4e-92 343.2 1188 31.6
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.5e-91 340.5 601 39.4
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.9e-88 332.0 893 33.1
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.7e-84 318.9 441 46.9
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.3e-81 309.3 914 31.0
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-77 295.0 490 42.4
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 6.5e-76 290.4 837 31.8
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.2e-71 275.4 298 52.3
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.8e-70 272.3 436 42.0
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 2.0e-69 268.9 784 31.1
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 3.9e-65 254.6 626 34.3
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 7.4e-64 250.4 466 38.6
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 3.1e-62 245.0 781 32.9
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.3e-60 239.6 398 42.2
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 2.9e-60 238.4 273 50.5
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 5.5e-51 207.6 510 34.5
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 4.4e-48 198.0 735 30.3
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.5e-43 183.0 445 34.6
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 7.2e-43 180.6 431 35.0
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 2.0e-37 162.5 434 33.2
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 3.4e-32 145.2 629 30.7
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 4.1e-30 138.3 143 53.8
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 5.0e-28 131.3 523 29.4
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.9e-27 129.4 195 46.7
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 5.6e-27 127.9 653 26.0
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 3.0e-25 122.1 344 30.5
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 4.0e-25 121.7 269 37.2
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 8.9e-25 120.6 508 28.5
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 3.7e-23 115.2 575 23.7
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.9e-22 112.8 487 29.0
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.9e-22 112.8 233 36.1
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 3.2e-22 112.1 152 41.4
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 3.9e-20 105.1 489 25.2
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.0e-18 97.4 127 44.9
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.4e-14 85.9 76 59.2
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 6.0e-13 81.3 393 26.2
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.0e-13 81.3 532 27.4
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 9.5e-11 73.9 226 33.6
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.7e-10 71.6 195 30.8
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 6.2e-10 71.2 76 55.3
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.1e-10 70.9 74 48.6


User provided reference genes

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