Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 4.8e-143 511.1 259 100.0
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 8.9e-129 463.8 241 95.4
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 8.3e-119 430.6 241 87.1
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 5.4e-110 401.4 264 75.8
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 1.7e-103 379.8 258 72.1
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 2.9e-103 379.0 241 75.5
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 9.2e-102 374.0 241 73.0
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 2.1e-101 372.9 241 75.1
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 1.3e-100 370.2 241 73.9
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 5.1e-100 368.2 241 73.9
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 5.1e-100 368.2 241 72.6
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 2.5e-99 365.9 241 71.8
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.5e-99 365.9 241 72.2
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 5.6e-99 364.8 241 72.6
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 1.8e-97 359.8 241 72.2
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.4e-97 359.4 240 70.4
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 3.1e-97 359.0 241 71.8
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 4.0e-97 358.6 241 70.1
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 5.2e-97 358.2 241 71.0
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 5.2e-97 358.2 241 71.0
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 6.8e-97 357.8 241 70.5
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 6.8e-97 357.8 241 71.0
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 8.9e-97 357.5 243 72.0
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.5e-96 356.7 241 71.8
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.5e-96 356.7 241 71.8
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 1.5e-96 356.7 241 70.5
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.0e-96 356.3 241 70.5
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 2.0e-96 356.3 241 69.3
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 2.6e-96 355.9 241 71.0
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 4.4e-96 355.1 241 69.3
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 9.9e-96 354.0 241 70.1
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.3e-95 353.6 241 69.3
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 1.3e-95 353.6 241 69.7
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 2.2e-95 352.8 241 68.5
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.2e-95 352.8 241 69.7
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.9e-95 352.4 241 71.4
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 2.9e-95 352.4 241 69.7
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 6.4e-95 351.3 241 70.5
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 6.4e-95 351.3 241 68.5
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 6.4e-95 351.3 241 71.0
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 8.4e-95 350.9 241 69.3
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 1.9e-94 349.7 241 68.0
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.9e-94 349.7 241 69.7
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 1.9e-94 349.7 241 68.5
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 2.4e-94 349.4 241 69.3
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 2.4e-94 349.4 241 68.0
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 3.2e-94 349.0 241 68.9
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 7.1e-94 347.8 241 67.6
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.2e-93 347.1 241 68.9
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 3.5e-93 345.5 241 67.2
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 4.6e-93 345.1 241 67.6
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 4.6e-93 345.1 241 68.9
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 4.6e-93 345.1 241 68.0
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 4.6e-93 345.1 241 68.5
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 6.0e-93 344.7 241 66.8
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 6.0e-93 344.7 241 67.2
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 7.8e-93 344.4 241 67.2
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 7.8e-93 344.4 241 68.0
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 1.0e-92 344.0 241 66.4
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 1.0e-92 344.0 241 68.0
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 1.3e-92 343.6 241 66.8
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 1.7e-92 343.2 241 66.8
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 1.7e-92 343.2 241 68.0
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 2.3e-92 342.8 241 68.0
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.3e-92 342.8 241 67.6
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.3e-92 342.8 241 67.6
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 3.9e-92 342.0 241 65.6
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 3.9e-92 342.0 241 66.4
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 5.1e-92 341.7 241 67.6
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 8.7e-92 340.9 241 67.6
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 1.5e-91 340.1 249 66.3
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.5e-91 340.1 241 65.6
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 1.9e-91 339.7 241 65.6
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 2.5e-91 339.3 211 75.4
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 3.3e-91 339.0 241 65.6
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 3.3e-91 339.0 241 65.1
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 3.3e-91 339.0 241 65.1
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 3.3e-91 339.0 241 66.8
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.3e-91 338.6 241 67.6
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 9.6e-91 337.4 241 65.1
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.2e-90 337.0 241 65.6
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 1.6e-90 336.7 241 65.1
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 2.1e-90 336.3 241 65.1
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 2.1e-90 336.3 257 64.2
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.1e-89 334.0 241 63.9
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 5.3e-89 331.6 241 65.1
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 1.2e-88 330.5 252 63.1
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 5.8e-88 328.2 241 66.0
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 3.8e-87 325.5 241 63.9
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 4.9e-87 325.1 287 56.8
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 6.4e-87 324.7 241 63.1
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.1e-86 323.9 263 61.2
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 1.9e-86 323.2 241 66.4
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 5.4e-86 321.6 319 54.5
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 5.4e-86 321.6 242 64.9
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 4.6e-85 318.5 213 71.4
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 2.3e-84 316.2 241 62.2
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 6.6e-84 314.7 208 69.7
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 1.6e-82 310.1 241 61.8
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 1.6e-82 310.1 280 57.5
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 2.8e-82 309.3 209 68.9
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 3.8e-79 298.9 238 60.9
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 1.2e-72 277.3 241 58.5
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 9.9e-72 274.2 197 67.0
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 2.9e-71 272.7 182 70.9
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 2.9e-71 272.7 241 57.7
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 4.5e-64 248.8 237 53.2
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 7.9e-61 238.0 241 52.3
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 2.3e-60 236.5 238 51.7
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 4.8e-58 228.8 238 48.3
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.6e-56 223.0 148 72.3
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 9.4e-54 214.5 146 71.9
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.2e-53 214.2 235 48.9
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 4.8e-50 202.2 248 44.0
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 7.0e-41 171.8 239 37.7
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 6.5e-39 165.2 260 39.6
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 3.6e-37 159.5 187 50.3
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 4.4e-35 152.5 124 55.6
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 5.7e-35 152.1 149 51.0
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 8.2e-34 148.3 149 50.3
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 9.4e-30 134.8 100 67.0
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 1.0e-23 114.8 93 57.0
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 4.8e-18 95.9 70 60.0
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.0e-15 88.2 67 65.7
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.3e-15 87.0 58 67.2


User provided reference genes

Program Settings