Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 0.0e+00 1240.3 605 100.0
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 8.1e-149 531.6 273 95.6
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.2e-138 496.9 296 84.8
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.2e-138 496.9 296 84.8
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 6.0e-136 488.8 296 83.8
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-133 479.2 286 84.6
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-133 479.2 286 84.6
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-133 479.2 286 84.6
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 5.3e-132 475.7 296 81.8
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 6.9e-132 475.3 296 82.1
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 6.9e-132 475.3 296 82.1
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.9e-132 475.3 297 82.5
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.7e-130 470.7 296 81.1
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.7e-130 470.7 296 81.1
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 3.8e-130 469.5 296 81.4
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 8.4e-130 468.4 296 81.8
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 8.4e-130 468.4 296 81.8
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.1e-129 468.0 296 80.7
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.9e-129 467.2 291 81.8
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.1e-128 463.8 297 81.5
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.9e-127 459.5 296 80.1
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 6.7e-127 458.8 296 79.7
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 6.7e-127 458.8 296 79.7
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 9.6e-126 454.9 296 79.1
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.3e-125 454.5 286 81.1
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.1e-125 453.8 286 81.1
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 2.8e-125 453.4 296 78.4
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 4.0e-124 449.5 286 80.1
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-124 449.5 296 79.4
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-124 449.5 296 79.4
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-124 449.5 296 79.4
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-124 449.5 296 79.4
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.5e-123 447.6 286 79.4
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.0e-123 447.2 296 78.0
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 4.5e-123 446.0 296 78.7
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.7e-122 444.1 304 77.0
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 8.4e-122 441.8 296 78.4
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 3.2e-121 439.9 296 78.4
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 9.6e-118 428.3 299 76.9
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 6.9e-116 422.2 296 75.3
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.2e-114 417.2 295 75.9
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.2e-114 417.2 295 75.9
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.2e-114 417.2 295 75.9
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.2e-114 417.2 295 75.9
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.2e-114 417.2 295 75.9
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.2e-114 417.2 295 75.9
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.4e-114 415.2 286 75.5
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.6e-112 411.0 228 88.6
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.3e-111 407.9 226 88.5
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.1e-104 384.0 228 82.9
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.3e-102 376.7 273 74.4
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-101 374.8 296 69.3
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 4.8e-101 372.9 232 80.6
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 3.2e-97 360.1 259 73.4
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 6.1e-96 355.9 243 77.0
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 2.3e-95 354.0 222 79.7
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 9.7e-94 348.6 186 91.4
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.8e-93 347.1 278 66.5
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.1e-92 343.2 259 70.3
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 5.5e-89 332.8 180 91.1
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 8.0e-88 328.9 221 75.6
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.3e-86 323.6 216 76.4
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 7.0e-84 315.8 259 68.3
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 7.0e-84 315.8 259 68.3
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 5.5e-81 306.2 233 68.7
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.0e-79 302.0 237 67.1
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 2.2e-74 284.3 175 83.4
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.9e-73 281.2 194 76.3
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 6.1e-72 276.2 163 84.7
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 2.3e-71 274.2 144 91.0
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 2.3e-71 274.2 144 91.0
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 2.6e-70 270.8 186 76.3
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 5.9e-67 259.6 171 76.6
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.3e-66 258.5 170 76.5
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 6.5e-66 256.1 168 76.8
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 6.5e-66 256.1 168 76.8
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.5e-65 254.2 168 76.2
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 2.5e-65 254.2 250 56.4
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 3.3e-65 253.8 250 56.8
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 4.2e-65 253.4 158 79.7
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 6.8e-63 246.1 177 71.8
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 4.4e-62 243.4 161 76.4
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.7e-61 240.4 161 75.8
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 4.9e-61 240.0 177 70.6
EL10Ac5g11442 Beta vulgaris HOM05D010562 ORTHO05D013232 2.4e-60 237.7 125 94.4
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 5.4e-60 236.5 250 54.0
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 8.6e-58 229.2 286 49.0
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.9e-57 228.0 306 50.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 2.5e-57 227.6 296 47.6
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 5.6e-57 226.5 124 91.9
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 7.3e-57 226.1 285 48.4
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.8e-56 224.2 303 47.9
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.8e-56 224.2 128 86.7
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.8e-56 224.2 144 80.6
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 4.0e-55 220.3 158 70.9
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.5e-54 218.4 117 93.2
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.4e-54 217.2 117 93.2
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 3.4e-54 217.2 117 93.2
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 3.4e-54 217.2 117 93.2
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 4.4e-54 216.9 144 74.3
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 9.8e-54 215.7 117 92.3
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.3e-53 215.3 117 92.3
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.2e-53 214.5 117 91.5
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 7.0e-52 209.5 115 88.7
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.9e-49 201.4 107 94.4
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.2e-48 198.7 200 55.5
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.4e-46 190.3 140 75.0
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 8.3e-45 186.0 213 47.4
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 3.5e-43 180.6 122 78.7
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 6.0e-43 179.9 215 53.0
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.5e-41 175.3 113 81.4
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 3.3e-41 174.1 123 75.6
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-38 164.1 198 53.5
Lj2A1228T88 Lonicera japonica HOM05D010562 ORTHO05D016078 6.4e-37 159.8 102 78.4
Ah.01g011710 Amaranthus hybridus HOM05D038933 ORTHO05D013692 1.2e-35 155.6 141 63.1
Lj2A1223G71 Lonicera japonica HOM05D010562 ORTHO05D016078 1.2e-35 155.6 93 81.7
Medtr0082s0050 Medicago truncatula HOM05D012137 ORTHO05D013232 3.3e-33 147.5 237 43.0
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-32 145.6 86 83.7
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 2.2e-29 134.8 105 67.6
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-29 134.8 102 69.6
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-28 132.1 77 83.1
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.4e-28 132.1 100 70.0
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 3.2e-28 131.0 65 95.4
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.7e-26 125.2 79 79.7
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.9e-25 121.7 61 95.1
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 1.6e-24 118.6 167 49.1
TPR.G1744 Trifolium pratense HOM05D010562 ORTHO05D013232 9.0e-23 112.8 83 79.5
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.0e-22 111.7 64 85.9
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 7.6e-22 109.8 174 41.4
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 2.9e-21 107.8 89 68.5
arahy.Tifrunner.gnm1.ann1.IE22H8 Arachis hypogaea HOM05D009805 ORTHO05D010994 4.9e-21 107.1 105 54.3
arahy.Tifrunner.gnm1.ann1.KWS21K Arachis hypogaea HOM05D009805 ORTHO05D010994 4.9e-21 107.1 105 54.3
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 2.4e-20 104.8 90 66.7
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.6e-19 102.1 88 67.0
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 2.7e-19 101.3 58 84.5
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 3.0e-18 97.8 155 41.9
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 6.6e-18 96.7 61 77.0
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 1.5e-17 95.5 60 75.0
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.9e-17 95.1 49 93.9
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 2.1e-16 91.7 48 95.8
C04p19560 Brassica napus HOM05D010562 ORTHO05D016078 3.6e-16 90.9 151 45.7
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 9.0e-15 86.3 84 60.7
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 1.5e-14 85.5 51 68.6
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 9.9e-14 82.8 77 54.5
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 1.7e-13 82.0 93 53.8
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 3.8e-13 80.9 63 65.1
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 6.4e-13 80.1 49 79.6
BraSC177t45768Z Brassica rapa HOM05D010562 ORTHO05D013232 2.4e-12 78.2 57 73.7
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 5.4e-12 77.0 65 63.1
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.3e-12 76.3 146 36.3
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.1e-11 75.1 115 43.5
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 6.0e-11 73.6 76 48.7
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 3.0e-10 71.2 54 70.4
BcaC05g26878 Brassica carinata HOM05D010562 ORTHO05D016078 8.7e-10 69.7 41 85.4
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 8.7e-10 69.7 82 52.4
Sopen05g012600 Solanum pennellii HOM05D012137 ORTHO05D011846 8.7e-10 69.7 37 89.2
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 5.6e-09 67.0 46 67.4
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 5.6e-09 67.0 46 67.4
Nitab4.5_0007309g0040 Nicotiana tabacum HOM05D012137 ORTHO05D013232 1.6e-08 65.5 38 78.9
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 2.1e-08 65.1 42 76.2
Ah.00g237930 Amaranthus hybridus HOM05D038933 ORTHO05D013692 2.8e-08 64.7 39 84.6
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 8.1e-08 63.2 66 56.1
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 1.1e-07 62.8 37 75.7
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-07 62.8 58 53.4
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 4.0e-07 60.8 186 27.4
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 4.0e-07 60.8 37 75.7
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 4.0e-07 60.8 37 75.7
BcaC08g43705 Brassica carinata HOM05D010562 ORTHO05D016078 9.0e-07 59.7 59 57.6
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-06 59.3 65 55.4
BolC4t23490H Brassica oleracea HOM05D010562 ORTHO05D013232 2.0e-06 58.5 37 78.4
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-06 58.2 43 67.4
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 5.8e-06 57.0 50 52.0


User provided reference genes

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