Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.0e-253 879.8 501 100.0
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.7e-192 675.2 483 80.1
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 2.2e-139 500.0 482 60.6
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 5.3e-114 415.6 464 54.3
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.3e-109 400.2 468 52.6
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 5.2e-77 292.7 319 52.7
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 4.6e-57 226.5 325 41.2
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 9.6e-55 218.8 316 43.7
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 5.8e-52 209.5 321 37.7
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 2.9e-51 207.2 364 37.4
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 4.9e-51 206.5 366 36.6
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 1.1e-50 205.3 296 42.6
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 1.4e-50 204.9 311 40.8
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 7.1e-50 202.6 310 41.9
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.6e-49 199.9 356 38.5
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.6e-49 199.9 320 37.2
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 1.0e-48 198.7 321 37.7
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 3.9e-48 196.8 321 37.4
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 6.7e-48 196.1 315 39.0
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 6.7e-48 196.1 321 38.3
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 1.5e-47 194.9 369 35.0
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.9e-47 194.5 354 35.6
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 4.3e-47 193.4 314 36.9
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 5.6e-47 193.0 324 38.0
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 9.6e-47 192.2 308 38.3
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 9.0e-45 185.7 321 37.7
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 1.5e-44 184.9 360 35.8
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 2.0e-44 184.5 318 38.7
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.6e-44 184.1 315 38.4
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.6e-44 184.1 307 37.5
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 2.6e-44 184.1 318 38.1
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.5e-44 183.3 286 38.5
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 5.8e-44 183.0 316 36.1
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.0e-43 182.2 307 38.4
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.0e-43 182.2 324 37.7
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.7e-43 181.4 286 38.1
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.2e-43 181.0 317 37.5
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.8e-43 180.3 302 38.7
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 8.4e-43 179.1 320 37.5
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.1e-42 178.7 383 35.8
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.4e-42 178.3 309 40.5
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.9e-42 177.9 354 33.3
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.9e-42 177.9 354 33.3
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 4.2e-42 176.8 317 37.9
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 4.2e-42 176.8 300 37.0
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.2e-41 175.3 300 36.7
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.6e-41 174.9 318 37.4
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.6e-41 174.9 300 36.7
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.6e-41 174.9 293 36.9
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 2.7e-41 174.1 314 36.3
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 4.6e-41 173.3 316 36.4
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 6.0e-41 172.9 325 35.7
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 7.9e-41 172.6 318 37.4
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.0e-40 172.2 354 32.5
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.0e-40 172.2 354 32.5
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 2.3e-40 171.0 311 35.7
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 5.1e-40 169.9 295 37.3
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 5.1e-40 169.9 313 35.8
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 8.7e-40 169.1 278 38.8
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.5e-39 168.3 311 37.9
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.9e-39 167.9 288 36.5
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 9.6e-39 165.6 300 37.7
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 1.3e-38 165.2 320 34.1
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.3e-38 165.2 322 34.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 1.6e-38 164.9 337 36.2
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.6e-38 164.9 323 35.3
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 2.8e-38 164.1 313 35.8
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.4e-37 161.8 315 34.6
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 4.1e-37 160.2 355 32.1
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 5.3e-37 159.8 308 36.0
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 9.0e-37 159.1 320 34.1
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.2e-36 158.7 298 35.6
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.0e-35 155.6 322 34.5
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.7e-35 154.8 304 33.2
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.9e-35 154.1 308 33.4
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 6.5e-35 152.9 295 35.9
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.4e-34 151.8 308 32.8
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 1.4e-34 151.8 313 33.5
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 3.2e-34 150.6 285 33.7
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 3.2e-34 150.6 368 31.8
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 3.2e-34 150.6 302 33.4
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 5.5e-34 149.8 317 33.4
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.2e-33 148.7 306 34.3
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 1.6e-33 148.3 311 32.2
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 4.6e-33 146.7 298 35.6
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.0e-32 145.6 225 39.1
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 1.8e-32 144.8 317 31.9
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 2.3e-32 144.4 307 31.6
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.3e-32 144.4 313 34.5
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 8.7e-32 142.5 284 33.8
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.1e-31 142.1 246 34.1
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.1e-31 142.1 317 30.6
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 7.4e-31 139.4 324 33.0
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 7.4e-31 139.4 310 33.2
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 2.8e-30 137.5 308 31.8
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 3.7e-30 137.1 317 32.8
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 8.2e-30 136.0 304 34.9
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.1e-29 135.6 284 33.1
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.8e-29 134.8 336 30.4
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 1.8e-29 134.8 314 29.9
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.8e-29 134.8 310 32.9
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 9.0e-29 132.5 301 32.6
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 1.2e-28 132.1 336 29.5
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 2.6e-28 131.0 315 34.3
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.4e-26 125.2 313 29.7
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.9e-26 124.8 313 29.7
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 7.2e-26 122.9 313 29.7
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.6e-25 121.7 344 31.4
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 3.6e-25 120.6 234 34.2
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 4.6e-25 120.2 301 31.9
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 6.1e-25 119.8 280 29.3
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.4e-24 118.6 184 43.5
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 3.0e-24 117.5 342 29.8
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 9.7e-23 112.5 297 30.6
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.7e-22 111.7 300 30.3
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 2.2e-22 111.3 255 32.5
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 6.3e-22 109.8 312 30.4
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.1e-21 109.0 242 29.8
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 2.6e-20 104.4 161 40.4
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 3.8e-19 100.5 287 28.9
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 1.4e-18 98.6 330 28.8
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 3.2e-18 97.4 300 28.3
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 4.2e-18 97.1 310 28.1
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 7.2e-18 96.3 121 43.8
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 7.2e-18 96.3 176 38.6
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 3.9e-16 90.5 233 30.5
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 3.3e-15 87.4 147 42.9
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 9.7e-15 85.9 133 37.6
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 7.0e-13 79.7 211 29.4
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.5e-12 78.6 285 24.6
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 2.6e-12 77.8 219 25.6
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 3.5e-12 77.4 108 45.4
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 1.1e-10 72.4 196 28.1
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 2.0e-07 61.6 102 35.3
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 2.6e-07 61.2 220 27.7
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.3e-07 60.8 132 36.4
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 4.4e-07 60.5 275 24.7
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 2.8e-06 57.8 59 50.8
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 2.8e-06 57.8 317 25.9
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 3.7e-06 57.4 57 50.9


User provided reference genes

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