Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 5.3e-58 227.6 128 100.0
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.5e-57 226.1 128 99.2
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 4.8e-51 204.5 130 89.2
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 1.0e-37 160.2 130 74.6
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 6.3e-35 151.0 126 69.8
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.0e-32 143.7 129 65.1
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 1.7e-32 142.9 122 63.1
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 6.5e-32 141.0 122 63.9
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.5e-31 139.0 128 64.8
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.5e-31 139.0 127 64.6
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 3.2e-31 138.7 129 66.7
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 5.5e-31 137.9 128 64.8
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 5.5e-31 137.9 128 65.6
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.5e-31 137.9 128 66.4
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 7.2e-31 137.5 121 67.8
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 9.4e-31 137.1 99 73.7
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 9.4e-31 137.1 129 65.1
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 1.2e-30 136.7 127 64.6
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-30 136.7 127 64.6
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.6e-30 136.3 128 65.6
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.6e-30 136.3 129 65.1
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 2.1e-30 136.0 129 67.4
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.1e-30 136.0 127 64.6
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.1e-30 136.0 128 64.1
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 2.7e-30 135.6 129 65.9
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 6.1e-30 134.4 127 64.6
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.1e-30 134.4 126 65.1
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 6.1e-30 134.4 125 64.0
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.9e-30 134.0 126 64.3
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.9e-30 134.0 126 65.1
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 7.9e-30 134.0 128 60.9
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 1.4e-29 133.3 125 60.8
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 1.4e-29 133.3 119 63.0
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-29 132.9 126 64.3
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 2.3e-29 132.5 127 64.6
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 2.3e-29 132.5 119 62.2
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 2.3e-29 132.5 128 66.4
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 3.0e-29 132.1 126 63.5
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.0e-29 132.1 130 65.4
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.0e-29 132.1 130 65.4
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 3.9e-29 131.7 128 62.5
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.9e-29 131.7 127 62.2
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 5.1e-29 131.3 112 67.0
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 5.1e-29 131.3 112 67.0
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 5.1e-29 131.3 126 64.3
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 5.1e-29 131.3 126 63.5
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.1e-29 131.3 126 63.5
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.1e-29 131.3 126 63.5
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.1e-29 131.3 126 63.5
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.1e-29 131.3 128 66.4
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 5.1e-29 131.3 124 63.7
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 6.7e-29 131.0 129 64.3
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 6.7e-29 131.0 127 64.6
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 6.7e-29 131.0 127 63.0
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 8.8e-29 130.6 124 64.5
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 8.8e-29 130.6 119 65.5
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.1e-28 130.2 126 61.1
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.1e-28 130.2 123 65.0
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.5e-28 129.8 118 61.9
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 2.0e-28 129.4 123 61.0
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.0e-28 129.4 126 63.5
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.0e-28 129.4 130 63.8
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 2.0e-28 129.4 128 67.2
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 2.6e-28 129.0 128 61.7
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.6e-28 129.0 129 62.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.3e-28 128.6 126 62.7
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 4.4e-28 128.3 120 62.5
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 4.4e-28 128.3 125 58.4
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 5.7e-28 127.9 103 66.0
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 5.7e-28 127.9 126 59.5
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 5.7e-28 127.9 128 61.7
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.4e-28 127.5 126 63.5
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 7.4e-28 127.5 126 62.7
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 7.4e-28 127.5 128 61.7
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 7.4e-28 127.5 127 63.0
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 9.7e-28 127.1 118 65.3
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.3e-27 126.7 130 64.6
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.3e-27 126.7 130 64.6
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.3e-27 126.7 130 64.6
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.3e-27 126.7 111 63.1
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.7e-27 126.3 127 55.1
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.7e-27 126.3 130 63.8
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.7e-27 126.3 105 65.7
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 2.2e-27 125.9 113 65.5
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 2.2e-27 125.9 107 67.3
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 2.2e-27 125.9 129 63.6
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 2.2e-27 125.9 129 63.6
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 2.2e-27 125.9 127 62.2
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 2.2e-27 125.9 129 62.0
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 2.8e-27 125.6 124 61.3
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 2.8e-27 125.6 129 62.8
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 2.8e-27 125.6 126 62.7
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 3.7e-27 125.2 94 75.5
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 3.7e-27 125.2 129 65.9
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 3.7e-27 125.2 116 63.8
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.7e-27 125.2 122 61.5
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 4.8e-27 124.8 128 60.2
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 4.8e-27 124.8 124 61.3
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 6.3e-27 124.4 129 59.7
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 8.2e-27 124.0 126 62.7
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 1.1e-26 123.6 128 59.4
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.1e-26 123.6 128 60.9
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.1e-26 123.6 129 62.0
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 1.1e-26 123.6 115 59.1
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.4e-26 123.2 127 60.6
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.4e-26 123.2 127 60.6
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 1.4e-26 123.2 125 57.6
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 2.4e-26 122.5 128 57.8
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.4e-26 122.5 128 61.7
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 3.1e-26 122.1 117 59.8
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 4.1e-26 121.7 120 62.5
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 4.1e-26 121.7 129 58.9
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 7.0e-26 120.9 128 60.2
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 7.0e-26 120.9 101 64.4
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 9.1e-26 120.6 128 60.2
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 9.1e-26 120.6 125 56.8
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 9.1e-26 120.6 126 56.3
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.2e-25 120.2 128 60.2
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 1.5e-25 119.8 128 60.2
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 1.5e-25 119.8 101 65.3
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 2.0e-25 119.4 120 58.3
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.0e-25 119.4 132 56.8
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 2.6e-25 119.0 126 58.7
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.5e-25 118.6 128 60.9
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 4.5e-25 118.2 126 61.9
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.0e-24 117.1 122 56.6
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-24 116.3 100 64.0
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.7e-24 116.3 125 56.8
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 2.2e-24 115.9 118 59.3
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 2.2e-24 115.9 123 56.1
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 2.9e-24 115.5 122 59.0
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 3.8e-24 115.2 127 58.3
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 3.8e-24 115.2 119 56.3
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 5.0e-24 114.8 113 61.9
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 6.5e-24 114.4 123 57.7
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 3.2e-23 112.1 122 52.5
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 9.4e-23 110.5 125 54.4
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.2e-22 110.2 126 60.3
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.2e-22 110.2 131 54.2
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 8.0e-22 107.5 123 56.1
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.3e-21 105.9 122 54.9
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 6.7e-21 104.4 125 54.4
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.8e-19 99.0 107 57.0
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.7e-19 98.6 107 54.2
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.8e-18 96.3 128 51.6
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 3.1e-18 95.5 129 52.7
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 5.3e-18 94.7 118 51.7
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.6e-17 93.2 120 52.5
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 1.0e-16 90.5 126 48.4
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.3e-16 90.1 129 45.7
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.2e-16 89.4 132 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 2.5e-15 85.9 89 53.9
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 5.5e-15 84.7 128 43.0
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 1.2e-14 83.6 56 78.6
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 1.6e-14 83.2 116 47.4
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 8.0e-14 80.9 55 85.5
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 2.3e-13 79.3 73 65.8
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 2.8e-11 72.4 108 46.3
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 8.3e-11 70.9 128 39.1
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.4e-10 69.3 71 56.3
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 3.1e-10 68.9 131 41.2


User provided reference genes

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