Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 0.0e+00 1125.9 638 100.0
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 6.2e-309 1063.5 640 95.5
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 2.1e-171 606.7 631 64.8
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.1e-83 314.3 658 36.9
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 2.8e-83 313.9 661 36.5
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 6.2e-83 312.8 660 37.1
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 1.8e-82 311.2 680 36.6
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.4e-81 307.0 684 36.1
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.3e-80 305.1 639 38.0
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 3.8e-80 303.5 682 36.5
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 6.4e-80 302.8 649 37.1
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.4e-79 300.8 652 36.2
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.6e-78 298.1 645 37.2
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.7e-78 297.4 645 36.9
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.9e-78 295.8 634 37.4
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 3.0e-77 293.9 679 37.7
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 3.9e-77 293.5 684 35.8
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.5e-76 290.8 656 36.7
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.3e-76 290.0 280 61.8
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.3e-76 290.0 280 61.8
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 2.1e-75 287.7 648 36.1
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 4.8e-75 286.6 652 36.0
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.4e-74 285.0 648 38.4
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.8e-74 284.6 707 33.8
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 3.1e-74 283.9 359 50.1
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.0e-74 283.5 652 35.6
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 4.0e-74 283.5 668 34.7
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 2.6e-73 280.8 719 33.8
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 6.4e-72 276.2 677 35.2
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 7.1e-71 272.7 643 36.2
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.6e-70 271.6 701 33.0
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.5e-70 270.4 599 34.7
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 4.6e-70 270.0 660 33.9
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 6.0e-70 269.6 685 34.7
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 7.9e-70 269.2 671 34.3
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.3e-69 268.5 808 32.1
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.0e-69 267.3 634 35.3
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 6.7e-69 266.2 655 34.2
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.9e-68 264.6 654 34.6
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.9e-68 264.6 584 36.8
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.5e-68 264.2 642 35.2
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 3.3e-68 263.8 643 34.2
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.3e-68 263.5 654 34.7
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.3e-68 263.5 642 33.6
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 7.4e-68 262.7 650 34.8
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 7.4e-68 262.7 654 34.4
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 9.6e-68 262.3 647 34.9
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.3e-67 261.9 668 33.1
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 2.8e-67 260.8 662 34.7
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 4.8e-67 260.0 652 34.8
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 4.8e-67 260.0 645 39.5
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 8.2e-67 259.2 298 53.4
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 8.2e-67 259.2 640 33.9
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.4e-66 258.5 682 34.5
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 2.4e-66 257.7 646 33.3
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 4.0e-66 256.9 642 34.3
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 4.0e-66 256.9 643 34.5
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 5.3e-66 256.5 651 33.0
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 6.9e-66 256.1 649 34.1
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-65 255.4 637 36.1
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 3.4e-65 253.8 643 35.6
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 1.7e-64 251.5 651 32.4
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.7e-64 251.5 639 34.7
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 2.2e-64 251.1 651 34.1
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.2e-64 251.1 653 33.8
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.9e-64 250.8 656 34.3
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 3.8e-64 250.4 615 32.8
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 4.2e-63 246.9 300 50.0
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 9.3e-63 245.7 298 50.0
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 3.5e-62 243.8 593 33.9
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.6e-62 243.4 638 34.3
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 4.6e-62 243.4 649 35.3
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 6.1e-62 243.0 642 33.6
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 7.9e-62 242.7 637 33.3
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 6.7e-61 239.6 636 33.2
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 4.3e-60 236.9 573 35.1
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 4.3e-60 236.9 705 31.5
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 5.7e-60 236.5 598 33.4
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 9.7e-60 235.7 647 32.6
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 8.2e-59 232.6 674 32.9
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 8.2e-59 232.6 644 33.5
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.4e-58 231.9 655 31.8
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.8e-58 231.5 700 32.4
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.8e-58 231.5 679 32.8
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.7e-56 224.9 645 32.6
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.2e-56 224.6 644 32.9
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 2.9e-56 224.2 637 33.4
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 3.8e-56 223.8 663 30.3
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.5e-56 223.0 294 44.9
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.1e-55 222.2 641 33.1
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.4e-55 221.9 197 68.0
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 3.2e-55 220.7 641 32.8
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.6e-54 218.4 637 31.2
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.6e-54 218.4 391 39.4
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 4.6e-54 216.9 644 31.5
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.6e-54 216.9 653 31.9
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 7.9e-54 216.1 636 30.0
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.0e-53 215.7 710 29.4
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.0e-53 215.7 640 34.1
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.4e-53 215.3 219 61.2
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.8e-53 214.9 223 58.3
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.8e-53 214.9 666 30.5
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 2.3e-53 214.5 219 61.2
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 2.3e-53 214.5 369 42.0
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.3e-53 214.5 639 31.6
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.3e-53 214.5 369 42.0
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 3.0e-53 214.2 608 32.6
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 8.8e-53 212.6 582 32.6
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 2.5e-52 211.1 687 29.1
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 3.3e-52 210.7 471 36.3
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 7.4e-52 209.5 665 29.9
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.3e-51 208.8 549 34.2
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.7e-51 207.2 659 31.3
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 4.8e-51 206.8 641 31.8
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 1.8e-50 204.9 655 30.5
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 6.9e-50 203.0 546 33.3
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 2.9e-48 197.6 574 32.6
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 3.8e-48 197.2 672 29.8
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 3.8e-48 197.2 641 31.7
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.1e-47 195.7 652 30.1
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.4e-45 188.7 222 51.8
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.8e-45 188.3 660 29.8
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 5.7e-44 183.3 639 30.8
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 1.7e-43 181.8 340 40.3
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 3.7e-43 180.6 643 30.9
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 3.1e-42 177.6 640 30.0
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 3.5e-41 174.1 646 29.7
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 2.9e-40 171.0 573 31.2
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 6.5e-40 169.9 642 30.4
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.2e-39 167.5 413 35.4
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 5.5e-39 166.8 642 29.0
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 7.2e-39 166.4 305 39.3
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 3.6e-38 164.1 627 27.9
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 2.3e-37 161.4 595 27.7
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 8.8e-37 159.5 367 35.4
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.1e-36 159.1 240 41.7
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.3e-35 155.6 470 31.9
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 4.8e-35 153.7 607 30.5
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.3e-32 145.6 581 26.9
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 1.6e-30 138.7 177 52.5
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 2.1e-30 138.3 205 43.4
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.7e-30 137.9 224 45.1
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 2.4e-26 124.8 233 33.5
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.3e-24 119.0 230 33.9
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 5.0e-24 117.1 639 25.5
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 6.5e-24 116.7 475 27.8
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 7.2e-23 113.2 253 34.0
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 9.4e-23 112.8 259 32.8
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 1.8e-21 108.6 475 26.7
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 5.7e-20 103.6 162 40.1
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 1.2e-17 95.9 104 56.7
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.7e-16 92.0 143 41.3
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.9e-15 88.6 586 23.5
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 7.2e-15 86.7 74 68.9
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 8.9e-13 79.7 131 40.5
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.8e-10 72.0 119 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 3.2e-10 71.2 538 21.4
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 1.2e-09 69.3 58 60.3
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 2.0e-09 68.6 125 36.0
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.7e-09 68.2 195 33.3
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 2.3e-08 65.1 70 61.4
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 2.9e-08 64.7 70 45.7
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 2.9e-08 64.7 43 67.4
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.9e-08 64.7 52 53.8
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.9e-08 64.7 52 53.8
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 3.9e-08 64.3 43 67.4
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 5.0e-08 63.9 103 42.7
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 6.6e-08 63.5 48 66.7
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 1.9e-07 62.0 59 49.2
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 1.9e-07 62.0 77 40.3
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 4.3e-07 60.8 131 38.9
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 9.5e-07 59.7 276 26.1
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 1.2e-06 59.3 91 37.4
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 1.2e-06 59.3 91 37.4
MBI19_g10807_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 1.2e-06 59.3 67 56.7
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.2e-06 59.3 73 56.2
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 2.1e-06 58.5 104 47.1
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 2.8e-06 58.2 72 38.9
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 4.7e-06 57.4 51 49.0


User provided reference genes

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