Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 5.5e-198 694.1 351 100.0
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.4e-81 307.4 167 92.8
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 1.3e-71 274.2 333 50.2
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 2.0e-54 217.2 297 42.1
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 7.4e-54 215.3 317 40.4
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 1.3e-53 214.5 274 44.9
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 2.2e-53 213.8 340 39.7
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 6.3e-53 212.2 305 42.0
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 1.8e-52 210.7 303 41.3
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 7.0e-52 208.8 307 41.0
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 7.0e-52 208.8 307 41.0
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 2.0e-51 207.2 302 41.1
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 5.9e-51 205.7 310 41.0
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 5.9e-51 205.7 307 41.4
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 5.9e-51 205.7 305 39.7
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.3e-50 204.5 305 41.0
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 3.8e-50 203.0 305 39.7
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 8.5e-50 201.8 307 39.1
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 1.5e-49 201.1 303 40.6
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 1.5e-49 201.1 338 36.1
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 2.5e-49 200.3 305 41.3
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 3.2e-49 199.9 331 38.7
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 4.2e-49 199.5 305 40.3
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 4.2e-49 199.5 303 39.6
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 5.5e-49 199.1 313 40.9
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 5.5e-49 199.1 303 39.9
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 9.4e-49 198.4 305 39.0
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.6e-48 197.6 260 45.8
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 2.7e-48 196.8 305 39.0
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 2.7e-48 196.8 307 40.1
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 3.6e-48 196.4 303 39.6
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 3.6e-48 196.4 303 39.6
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 3.6e-48 196.4 324 38.9
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 4.7e-48 196.1 305 40.3
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 6.1e-48 195.7 307 39.4
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 6.1e-48 195.7 305 40.3
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 8.0e-48 195.3 304 37.2
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 8.0e-48 195.3 304 37.2
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 1.4e-47 194.5 305 39.0
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 1.8e-47 194.1 304 37.2
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 1.8e-47 194.1 304 37.2
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.8e-47 194.1 304 37.8
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 3.0e-47 193.4 303 39.9
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 3.0e-47 193.4 305 39.3
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 3.0e-47 193.4 219 47.5
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 3.0e-47 193.4 305 38.7
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 4.0e-47 193.0 301 38.2
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 5.2e-47 192.6 362 36.2
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 6.7e-47 192.2 302 39.7
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 1.1e-46 191.4 305 38.7
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 1.1e-46 191.4 304 37.8
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.1e-46 191.4 291 40.5
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 1.1e-46 191.4 304 38.8
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 2.0e-46 190.7 305 39.7
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 3.3e-46 189.9 355 36.6
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 5.7e-46 189.1 297 39.4
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 5.7e-46 189.1 230 48.7
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.7e-45 187.6 334 36.8
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 2.2e-45 187.2 304 37.2
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 8.2e-45 185.3 305 38.7
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 3.1e-44 183.3 304 36.8
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 5.3e-44 182.6 304 37.5
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 5.3e-44 182.6 316 38.0
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 7.0e-44 182.2 314 36.9
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 7.0e-44 182.2 305 37.0
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 9.1e-44 181.8 331 36.0
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 1.2e-43 181.4 304 34.9
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.6e-43 181.0 303 39.3
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.0e-43 180.6 314 36.6
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.0e-43 180.6 331 35.6
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 2.6e-43 180.3 261 41.8
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 3.5e-43 179.9 265 42.3
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 3.5e-43 179.9 308 36.0
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 4.5e-43 179.5 365 33.7
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 5.9e-43 179.1 317 37.2
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 7.7e-43 178.7 304 35.5
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 2.2e-42 177.2 378 33.9
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 2.9e-42 176.8 342 36.0
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 8.5e-42 175.3 326 34.4
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 8.5e-42 175.3 307 36.8
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 8.5e-42 175.3 305 38.0
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 1.9e-41 174.1 280 39.3
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 4.2e-41 172.9 269 38.3
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 2.1e-40 170.6 357 34.5
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 2.7e-40 170.2 371 33.2
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 1.0e-39 168.3 336 36.3
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.4e-39 167.9 305 35.7
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 7.5e-38 162.2 267 38.2
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 2.2e-37 160.6 268 36.6
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.2e-37 160.6 267 36.7
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 2.4e-36 157.1 418 29.9
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 7.0e-36 155.6 246 38.6
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 4.9e-29 132.9 305 33.1
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 4.9e-29 132.9 118 59.3
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 4.1e-28 129.8 102 66.7
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 5.4e-28 129.4 116 59.5
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 2.3e-26 124.0 176 40.3
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.5e-25 121.3 102 64.7
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 1.9e-25 120.9 318 29.2
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 8.0e-24 115.5 142 45.1
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 1.0e-23 115.2 299 28.8
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 5.2e-23 112.8 298 27.5
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 8.9e-23 112.1 149 40.9
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.0e-19 100.9 140 37.1
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 7.3e-17 92.4 126 37.3
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 9.5e-17 92.0 254 28.7
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 2.1e-16 90.9 64 75.0
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 4.1e-12 76.6 118 36.4
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.7e-11 73.9 145 30.3
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 7.8e-11 72.4 100 36.0
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.6e-08 64.7 58 53.4
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 6.8e-07 59.3 65 41.5
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 2.6e-06 57.4 61 41.0
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 3.4e-06 57.0 58 55.2
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 7.5e-06 55.8 94 36.2


User provided reference genes

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