Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 7.8e-188 660.2 314 100.0
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 2.5e-154 548.9 314 82.8
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 8.5e-142 507.3 303 75.6
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 2.5e-141 505.8 300 76.0
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 2.1e-140 502.7 311 73.0
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 2.1e-140 502.7 300 74.0
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 2.7e-140 502.3 300 74.3
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 6.1e-140 501.1 300 74.7
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 6.1e-140 501.1 300 74.7
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 6.1e-140 501.1 300 74.7
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 1.4e-139 500.0 309 74.1
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 2.3e-139 499.2 301 75.1
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 2.3e-139 499.2 312 72.1
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 1.1e-138 496.9 304 74.0
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 1.5e-138 496.5 311 71.7
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 2.5e-138 495.7 300 74.7
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 4.3e-138 495.0 311 70.4
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 5.7e-138 494.6 300 74.3
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 1.7e-137 493.0 300 74.3
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 2.8e-137 492.3 310 72.6
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 8.2e-137 490.7 307 72.6
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 8.2e-137 490.7 300 73.0
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 1.4e-136 490.0 311 69.8
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 2.4e-136 489.2 306 71.6
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 3.1e-136 488.8 300 72.7
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 3.1e-136 488.8 311 70.1
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 4.1e-136 488.4 305 72.8
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 4.1e-136 488.4 298 73.2
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 9.1e-136 487.3 301 73.8
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 9.1e-136 487.3 300 72.0
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 1.2e-135 486.9 300 74.0
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 1.5e-135 486.5 308 70.8
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 2.6e-135 485.7 308 71.4
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 2.6e-135 485.7 311 69.8
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 2.6e-135 485.7 308 69.8
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 3.4e-135 485.3 301 73.8
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 4.5e-135 485.0 301 72.4
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 4.5e-135 485.0 301 72.4
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 4.5e-135 485.0 300 72.3
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 7.7e-135 484.2 334 67.7
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 1.3e-134 483.4 304 69.1
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 1.7e-134 483.0 300 72.0
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 1.7e-134 483.0 304 71.1
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 2.2e-134 482.6 304 70.7
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 2.2e-134 482.6 300 72.7
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 5.0e-134 481.5 313 68.7
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 5.0e-134 481.5 308 70.1
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 8.5e-134 480.7 304 69.4
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 1.1e-133 480.3 304 70.4
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 1.1e-133 480.3 304 70.4
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 1.4e-133 479.9 304 70.1
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 1.4e-133 479.9 305 69.2
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 4.2e-133 478.4 300 72.3
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 5.5e-133 478.0 304 68.8
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 1.6e-132 476.5 300 70.7
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 2.1e-132 476.1 304 69.7
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 2.1e-132 476.1 308 70.1
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 6.1e-132 474.6 300 72.7
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 7.9e-132 474.2 304 68.4
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 7.9e-132 474.2 300 71.7
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.4e-131 473.4 300 72.0
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 2.3e-131 472.6 298 72.5
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 6.7e-131 471.1 326 65.6
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 1.5e-130 469.9 305 68.9
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 3.3e-130 468.8 303 68.6
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 3.3e-130 468.8 300 72.7
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 3.3e-130 468.8 305 68.9
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 1.3e-129 466.8 308 71.1
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 1.7e-129 466.5 304 71.7
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 2.2e-129 466.1 300 71.3
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 2.2e-129 466.1 300 70.3
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 2.8e-129 465.7 300 70.7
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 3.7e-129 465.3 300 71.0
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 4.8e-129 464.9 301 70.4
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 6.3e-129 464.5 289 72.3
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 8.2e-129 464.2 304 69.1
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 1.1e-128 463.8 300 71.3
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 3.1e-128 462.2 300 71.0
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 5.3e-128 461.5 306 69.3
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 7.0e-128 461.1 312 67.6
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 7.0e-128 461.1 300 71.0
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 9.1e-128 460.7 300 69.3
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 9.1e-128 460.7 300 70.7
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 2.0e-127 459.5 299 70.6
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 2.6e-127 459.1 301 67.8
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 3.5e-127 458.8 301 69.1
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 5.9e-127 458.0 304 67.8
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 5.0e-126 454.9 305 66.9
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 6.5e-126 454.5 300 69.7
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 1.9e-125 453.0 301 68.1
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 9.4e-125 450.7 304 66.1
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 1.1e-122 443.7 311 65.6
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 5.7e-122 441.4 305 68.2
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 2.2e-121 439.5 300 65.3
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 3.1e-120 435.6 344 59.9
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 5.3e-120 434.9 262 77.1
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 7.0e-120 434.5 306 64.4
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 5.9e-119 431.4 300 66.3
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 1.3e-118 430.3 286 68.9
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 3.6e-116 422.2 300 61.0
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 4.7e-116 421.8 304 61.8
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 3.7e-113 412.1 319 62.7
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.4e-112 410.2 300 64.0
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 1.8e-112 409.8 307 61.6
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 1.7e-110 403.3 306 61.1
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 8.5e-110 401.0 299 65.2
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 5.2e-107 391.7 301 62.5
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 1.5e-106 390.2 304 60.5
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 2.8e-105 386.0 265 66.4
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 7.7e-103 377.9 299 60.5
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 1.5e-101 373.6 299 57.9
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 1.8e-99 366.7 248 65.3
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 8.9e-99 364.4 304 55.3
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 2.6e-98 362.8 301 56.5
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 1.7e-94 350.1 300 55.7
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 6.2e-92 341.7 301 53.8
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 8.0e-92 341.3 257 57.2
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 2.9e-89 332.8 323 54.8
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 5.4e-88 328.6 303 54.1
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 1.1e-85 320.9 307 49.8
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 5.6e-85 318.5 306 47.7
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 4.7e-84 315.5 230 65.2
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 8.1e-84 314.7 195 71.8
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 5.2e-83 312.0 214 66.4
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 1.6e-76 290.4 180 73.3
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 9.9e-74 281.2 180 69.4
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 1.4e-72 277.3 178 70.8
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 5.2e-67 258.8 184 65.8
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 7.6e-66 255.0 177 64.4
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 2.4e-64 250.0 165 67.3
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 1.5e-53 214.2 135 72.6
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 3.4e-50 203.0 138 65.2
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 3.8e-49 199.5 136 64.7
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 2.3e-46 190.3 113 78.8
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 4.8e-44 182.6 116 67.2
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 6.2e-44 182.2 171 54.4
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 6.5e-41 172.2 282 39.0
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 2.7e-39 166.8 122 57.4
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 4.1e-35 152.9 125 57.6
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 7.6e-34 148.7 159 51.6
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 6.7e-30 135.6 89 65.2
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 1.1e-27 128.3 116 52.6
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 3.3e-21 106.7 63 73.0
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 6.3e-20 102.4 62 67.7
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.8e-19 100.9 73 57.5
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 5.7e-13 79.3 69 56.5
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 6.5e-09 65.9 53 49.1
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 6.5e-09 65.9 108 42.6
BcaC06g33893 Brassica carinata HOM05D005095 ORTHO05D092937 3.6e-07 60.1 42 59.5
Phvul.011G099600 Phaseolus vulgaris HOM05D000115 ORTHO05D001535 4.0e-06 56.6 73 37.0
Mapoly0018s0002 Marchantia polymorpha HOM05D000115 ORTHO05D001535 6.7e-06 55.8 73 35.6
Pp3c1_18530 Physcomitrium patens HOM05D000115 ORTHO05D001535 6.7e-06 55.8 73 35.6
Gohir.D08G017200 Gossypium hirsutum HOM05D000115 ORTHO05D001535 8.8e-06 55.5 73 35.6
Gorai.004G011600 Gossypium raimondii HOM05D000115 ORTHO05D001535 8.8e-06 55.5 73 35.6
Lj3g0000823 Lotus japonicus HOM05D000115 ORTHO05D001535 8.8e-06 55.5 73 35.6
Lj3g0004215 Lotus japonicus HOM05D000115 ORTHO05D001535 8.8e-06 55.5 73 35.6
Psat7g204720 Pisum sativum HOM05D000115 ORTHO05D001535 8.8e-06 55.5 73 35.6
VMungo1127G0409 Vigna mungo HOM05D000115 ORTHO05D001535 8.8e-06 55.5 73 35.6


User provided reference genes

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