Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.9e-227 791.6 400 100.0
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 7.9e-185 650.6 434 78.3
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.4e-170 603.2 440 71.6
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 2.0e-156 556.2 403 70.5
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.5e-154 549.3 416 67.5
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 5.5e-154 548.1 416 67.3
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.2e-153 547.0 435 65.7
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.0e-152 543.9 435 64.8
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.4e-152 543.5 416 66.8
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 3.0e-152 542.3 439 65.1
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.0e-152 542.0 441 64.4
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 6.7e-152 541.2 424 66.5
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.5e-151 540.0 436 66.1
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 1.7e-150 536.6 447 63.5
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 2.2e-150 536.2 436 64.2
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 8.2e-150 534.3 440 63.6
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.1e-149 533.9 441 64.4
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 2.4e-149 532.7 445 63.8
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.3e-149 531.6 415 66.0
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 2.6e-148 529.3 411 66.2
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 2.6e-148 529.3 436 63.5
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 5.9e-148 528.1 429 64.1
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.7e-147 526.6 433 63.3
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 5.0e-147 525.0 391 69.6
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 6.5e-147 524.6 444 63.5
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.1e-146 523.9 440 62.7
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 4.2e-146 521.9 386 67.4
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 7.2e-146 521.2 446 62.3
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 3.6e-145 518.8 453 60.7
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.7e-145 518.5 445 62.2
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 4.7e-145 518.5 392 68.1
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 6.1e-145 518.1 419 63.7
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.0e-144 517.3 443 61.9
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.4e-144 516.9 433 63.5
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 3.0e-144 515.8 408 64.5
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 5.2e-144 515.0 408 65.2
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 6.8e-144 514.6 445 61.8
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.2e-143 513.8 406 64.5
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 4.4e-143 511.9 436 61.7
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 9.8e-143 510.8 444 61.5
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.7e-142 510.0 434 60.8
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.2e-142 509.6 407 63.6
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.8e-142 509.2 405 63.7
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 3.7e-142 508.8 439 62.0
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 4.8e-142 508.4 452 60.8
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 6.3e-142 508.1 442 63.1
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 8.3e-142 507.7 434 61.5
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 8.3e-142 507.7 406 64.3
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.4e-141 506.9 440 62.0
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 1.4e-141 506.9 445 60.9
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 5.4e-141 505.0 440 60.9
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 5.4e-141 505.0 388 66.2
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 7.0e-141 504.6 406 63.1
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.2e-140 503.8 435 63.0
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 2.0e-140 503.1 401 67.1
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.7e-140 502.7 412 65.0
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 4.5e-140 501.9 410 64.6
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 7.7e-140 501.1 447 60.2
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.7e-139 500.0 409 62.8
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.7e-139 500.0 417 60.9
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 2.9e-139 499.2 443 60.0
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.0e-139 498.4 445 60.2
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.1e-138 497.3 420 62.4
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 1.9e-138 496.5 418 62.4
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 5.5e-138 495.0 420 62.1
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 5.5e-138 495.0 417 62.1
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 9.4e-138 494.2 430 60.7
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.2e-137 493.8 418 63.6
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 2.1e-137 493.0 442 60.6
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 4.7e-137 491.9 398 63.1
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 6.1e-137 491.5 417 62.6
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 8.0e-137 491.1 422 61.1
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.3e-136 489.6 409 63.1
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 8.8e-136 487.6 406 61.8
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 8.8e-136 487.6 406 61.8
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 1.2e-135 487.3 442 59.5
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.2e-135 487.3 391 65.0
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 1.5e-135 486.9 408 62.0
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 3.4e-135 485.7 435 60.5
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.4e-135 485.3 437 61.8
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 7.5e-135 484.6 388 63.4
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.3e-134 483.8 416 59.6
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 2.8e-134 482.6 443 58.7
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.1e-133 480.7 419 60.4
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 2.4e-133 479.6 412 60.9
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.1e-133 478.8 421 62.5
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 7.0e-133 478.0 419 60.1
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.2e-132 477.2 419 60.6
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.2e-132 477.2 419 60.6
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.6e-132 476.9 441 56.7
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 5.9e-132 474.9 434 59.0
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 1.3e-131 473.8 406 60.8
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.3e-131 473.8 356 65.4
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 3.8e-131 472.2 405 60.5
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 3.8e-131 472.2 432 60.9
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 5.6e-130 468.4 431 60.6
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 1.0e-128 464.2 386 62.2
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 3.4e-127 459.1 405 60.7
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 5.7e-127 458.4 389 61.2
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 7.5e-127 458.0 487 54.4
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 6.4e-126 454.9 411 58.2
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 7.0e-125 451.4 386 60.4
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 7.0e-125 451.4 345 67.0
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.7e-124 449.5 431 57.8
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.5e-124 449.1 410 56.3
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.7e-123 446.8 417 55.9
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 6.6e-123 444.9 381 60.6
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.9e-122 443.4 421 55.8
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 8.0e-121 438.0 433 54.3
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.5e-119 433.7 386 57.0
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.3e-118 430.6 386 58.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.3e-118 430.6 386 58.8
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.2e-118 429.9 316 69.0
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 2.9e-118 429.5 406 55.4
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 8.3e-118 427.9 388 56.2
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 3.5e-116 422.5 386 56.2
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 1.7e-115 420.2 421 55.1
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 3.0e-115 419.5 411 56.2
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.1e-114 417.5 333 65.2
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 1.1e-114 417.5 380 56.3
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.2e-113 414.1 427 52.7
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.6e-113 413.7 418 55.7
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.8e-112 410.2 384 57.0
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.4e-109 400.6 412 54.1
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.9e-109 400.2 404 55.4
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 3.2e-109 399.4 327 62.1
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.0e-107 392.9 432 53.7
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 5.4e-101 372.1 389 51.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.1e-98 364.4 264 70.1
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.6e-97 360.5 193 94.8
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 4.4e-95 352.4 249 71.5
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.3e-93 344.7 250 70.0
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.6e-92 344.0 246 70.3
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.2e-85 319.7 252 62.3
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 4.9e-78 295.8 250 57.6
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.2e-77 293.1 182 85.2
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 6.0e-76 288.9 396 42.9
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-72 277.7 187 75.9
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 4.2e-69 266.2 419 40.8
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.6e-68 262.7 205 65.4
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.0e-67 261.5 397 41.6
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.0e-67 260.0 274 47.4
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 7.6e-63 245.4 174 75.3
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.9e-62 243.4 250 50.4
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 1.4e-56 224.6 202 56.4
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 8.5e-54 215.3 196 57.7
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 7.2e-45 185.7 251 40.2
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 7.0e-40 169.1 119 73.1
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 5.5e-37 159.5 130 63.1
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.6e-34 150.6 114 70.2
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 5.7e-34 149.4 88 76.1
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 5.5e-29 132.9 232 34.9
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 4.7e-28 129.8 242 37.2
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.1e-24 116.7 63 82.5
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 4.1e-24 116.7 79 69.6
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.2e-23 115.2 63 81.0
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.0e-23 114.4 63 81.0
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.6e-20 103.6 286 29.4
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 2.8e-17 94.0 210 33.8
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.6e-15 88.2 73 58.9
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 5.9e-15 86.3 247 28.7
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 1.6e-12 78.2 99 42.4
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.8e-11 74.7 130 34.6
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.2e-10 72.0 74 48.6
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 5.7e-10 69.7 354 24.3
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-08 65.5 38 76.3
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 9.2e-08 62.4 75 45.3
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 2.0e-07 61.2 90 33.3


User provided reference genes

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