Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 3.3e-281 971.1 494 100.0
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.9e-269 931.4 494 96.2
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 7.1e-220 767.3 495 78.2
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 3.2e-204 715.3 494 72.1
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 2.5e-188 662.5 496 67.7
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 3.6e-163 578.9 495 60.0
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 5.4e-159 565.1 495 59.0
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.1e-155 553.1 498 57.6
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 8.0e-155 551.2 479 60.3
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.3e-154 549.7 498 57.8
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 4.0e-154 548.9 497 58.1
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.2e-153 547.4 495 57.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.5e-153 547.0 476 60.1
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 3.4e-153 545.8 482 58.5
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 4.4e-153 545.4 495 58.6
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 1.1e-151 540.8 484 56.6
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 1.9e-151 540.0 483 57.8
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 1.6e-150 537.0 492 56.1
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 1.6e-150 537.0 500 56.8
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 6.0e-150 535.0 496 57.1
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 1.0e-149 534.3 495 54.5
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 1.7e-149 533.5 496 57.1
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 8.6e-149 531.2 485 57.1
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 1.5e-148 530.4 491 56.8
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 5.6e-148 528.5 484 56.2
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-147 527.3 497 54.9
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 3.6e-147 525.8 493 55.8
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 1.4e-146 523.9 492 55.9
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 3.1e-146 522.7 497 54.5
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 4.0e-146 522.3 497 55.5
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.2e-146 521.9 497 54.1
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.5e-145 520.4 497 53.9
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.0e-145 520.0 497 53.9
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.6e-145 519.6 504 55.2
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 3.4e-145 519.2 487 55.0
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.4e-145 518.8 495 54.5
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 7.5e-145 518.1 494 54.0
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.7e-144 515.8 495 54.3
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.9e-144 515.4 497 53.5
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.9e-143 513.5 487 54.8
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.4e-143 513.1 487 54.4
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 3.2e-143 512.7 496 54.0
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.6e-142 510.4 489 54.0
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.1e-142 510.0 490 53.3
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.1e-142 510.0 490 53.3
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 7.8e-142 508.1 497 52.7
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 2.3e-141 506.5 490 53.9
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 5.1e-141 505.4 496 53.2
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 8.6e-141 504.6 491 52.7
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.9e-140 503.4 481 52.8
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.6e-140 501.9 487 53.8
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 7.3e-140 501.5 493 53.5
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 7.3e-140 501.5 492 53.5
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 2.1e-139 500.0 497 51.3
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.8e-139 499.6 493 53.1
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 2.8e-139 499.6 497 51.5
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.4e-138 497.3 497 51.3
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 5.2e-138 495.4 490 52.2
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.6e-137 493.0 484 52.1
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 3.8e-136 489.2 495 53.3
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.2e-135 486.1 478 51.9
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 4.1e-135 485.7 497 52.7
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 7.1e-135 485.0 491 51.5
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 9.2e-135 484.6 487 54.0
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 6.0e-134 481.9 494 50.4
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 1.3e-133 480.7 497 52.3
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.3e-133 480.7 407 62.2
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 1.7e-133 480.3 489 50.7
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 3.0e-133 479.6 485 49.9
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 3.9e-133 479.2 495 52.3
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 6.6e-133 478.4 484 50.2
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.1e-132 477.6 492 49.6
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 3.3e-132 476.1 485 50.9
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 9.6e-132 474.6 490 49.0
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.1e-131 473.4 488 50.0
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 2.1e-131 473.4 485 51.3
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 2.8e-131 473.0 489 51.5
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 2.8e-131 473.0 483 51.1
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.1e-130 471.1 490 49.4
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.8e-130 470.3 495 50.9
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 9.0e-130 468.0 485 51.5
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 1.2e-129 467.6 487 48.9
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.3e-128 464.2 498 50.0
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 2.2e-128 463.4 492 49.0
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 3.8e-128 462.6 495 48.5
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 3.8e-128 462.6 372 63.2
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 8.4e-128 461.5 489 50.5
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.9e-127 460.3 490 50.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 9.3e-127 458.0 481 50.9
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.6e-126 457.2 490 49.6
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 2.7e-126 456.4 481 48.9
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 3.5e-126 456.1 543 45.5
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 4.6e-126 455.7 491 49.9
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 7.8e-126 454.9 486 50.2
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 3.0e-125 453.0 486 50.0
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 5.1e-125 452.2 499 47.5
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 1.1e-124 451.1 483 49.9
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.9e-124 450.3 407 57.7
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.5e-124 449.9 493 49.5
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.4e-122 443.4 497 48.9
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 2.6e-121 439.9 373 58.4
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.4e-121 439.5 485 49.3
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 5.8e-121 438.7 487 47.4
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.8e-120 436.0 482 50.0
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 5.4e-119 432.2 486 48.4
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.2e-113 414.5 487 46.4
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 3.4e-113 412.9 469 49.0
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.9e-112 409.8 485 47.4
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 8.2e-107 391.7 385 52.5
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 7.9e-102 375.2 444 46.6
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 3.7e-99 366.3 411 46.2
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.2e-97 361.3 475 46.1
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.1e-92 344.7 529 37.6
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.2e-89 334.7 375 48.3
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 1.2e-89 334.7 477 43.6
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 1.0e-88 331.6 329 52.6
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 7.2e-87 325.5 287 55.4
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 3.0e-85 320.1 495 37.6
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 6.7e-85 318.9 478 39.5
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 6.7e-85 318.9 287 55.7
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 5.7e-84 315.8 288 54.5
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.2e-80 303.9 495 38.8
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.1e-76 291.6 362 48.3
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.4e-74 284.6 250 54.8
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 4.4e-68 263.1 359 42.9
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 4.4e-68 263.1 413 38.3
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-67 261.5 313 45.4
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.8e-66 257.7 424 36.3
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 3.2e-63 246.9 292 45.9
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 9.4e-63 245.4 292 47.3
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 8.0e-62 242.3 374 39.8
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 1.8e-61 241.1 478 33.7
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 9.8e-60 235.3 489 33.1
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 1.4e-58 231.5 192 62.5
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 3.1e-58 230.3 540 30.9
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.7e-57 227.3 230 50.4
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 3.5e-57 226.9 595 30.3
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 1.3e-56 224.9 228 50.9
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 2.9e-56 223.8 487 32.6
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.9e-56 223.8 371 35.3
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 1.6e-54 218.0 185 59.5
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 6.1e-54 216.1 481 31.2
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 3.0e-53 213.8 159 63.5
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 4.4e-52 209.9 247 49.0
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 2.3e-48 197.6 655 26.3
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.5e-47 194.1 474 30.8
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-46 191.8 421 31.4
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 3.6e-46 190.3 173 57.2
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 9.2e-42 175.6 192 49.0
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.6e-41 174.9 279 39.8
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 6.6e-40 169.5 460 29.8
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 2.8e-38 164.1 254 38.6
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 3.6e-38 163.7 261 37.9
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 4.9e-35 153.3 362 30.4
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 6.4e-35 152.9 478 28.9
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 2.3e-32 144.4 147 53.1
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 5.1e-32 143.3 95 67.4
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 2.0e-28 131.3 122 51.6
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 2.6e-28 131.0 128 53.1
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 4.1e-26 123.6 131 47.3
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 4.1e-26 123.6 132 47.0
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 5.4e-26 123.2 154 46.1
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.7e-25 120.9 97 60.8
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 4.6e-25 120.2 306 32.7
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 9.5e-23 112.5 116 51.7
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 3.2e-18 97.4 118 50.0
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 1.2e-17 95.5 103 46.6
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 3.9e-16 90.5 146 37.7
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 7.6e-12 76.3 288 23.3
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.4e-11 72.8 73 46.6


User provided reference genes

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