Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033360 Chenopodium quinoa HOM05D000207 ORTHO05D013649 9.2e-81 303.5 155 100.0
AUR62011862 Chenopodium quinoa HOM05D000207 ORTHO05D000606 1.0e-23 114.0 63 93.7
AUR62024705 Chenopodium quinoa HOM05D000207 ORTHO05D000606 1.0e-23 114.0 63 93.7
EL10As5g23476 Beta vulgaris HOM05D000207 ORTHO05D000606 2.6e-19 99.4 60 90.0
Ah.11g049580 Amaranthus hybridus HOM05D000207 ORTHO05D000606 3.2e-17 92.4 60 83.3
Ah.02g112010 Amaranthus hybridus HOM05D000411 ORTHO05D000606 7.9e-16 87.8 60 81.7
Sc05g0000660 Simmondsia chinensis HOM05D000207 ORTHO05D000606 7.4e-14 81.3 60 70.0
Sc24g0003170 Simmondsia chinensis HOM05D000207 ORTHO05D000606 6.3e-13 78.2 60 68.3
Hund02919 Selenicereus undatus HOM05D000207 ORTHO05D000606 3.1e-12 75.9 60 68.3
Nn1g02818 Nelumbo nucifera HOM05D000207 ORTHO05D000606 4.1e-12 75.5 62 62.9
Aqoxy5G00206 Aquilegia oxysepala HOM05D000207 ORTHO05D000606 6.9e-12 74.7 62 62.9
GSVIVG01028361001 Vitis vinifera HOM05D000207 ORTHO05D000606 9.0e-12 74.3 62 59.7
ATR0736G130 Amborella trichopoda HOM05D000207 ORTHO05D000606 3.4e-11 72.4 67 59.7
Nn1g06877 Nelumbo nucifera HOM05D000207 ORTHO05D000606 3.4e-11 72.4 62 61.3
Dinv22391 Davidia involucrata HOM05D000207 ORTHO05D000606 4.5e-11 72.0 62 64.5
Dinv34641 Davidia involucrata HOM05D000207 ORTHO05D000606 7.7e-11 71.2 62 64.5
PGR031G3709 Punica granatum HOM05D000207 ORTHO05D000606 7.7e-11 71.2 62 61.3
Lj1g0021765 Lotus japonicus HOM05D000207 ORTHO05D000606 1.0e-10 70.9 62 61.3
MBI02_g33364_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D000606 1.0e-10 70.9 67 56.7
Hund09606 Selenicereus undatus HOM05D000207 ORTHO05D013649 1.0e-10 70.9 65 61.5
MBI07_g16900_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D000606 1.7e-10 70.1 62 59.7
Nitab4.5_0006655g0030 Nicotiana tabacum HOM05D000207 ORTHO05D000606 2.2e-10 69.7 62 66.1
Nitab4.5_0007062g0040 Nicotiana tabacum HOM05D000207 ORTHO05D000606 2.2e-10 69.7 62 66.1
Peaxi162Scf00624g00046 Petunia axillaris HOM05D000207 ORTHO05D000606 2.9e-10 69.3 62 61.3
Eucgr.B01564 Eucalyptus grandis HOM05D000207 ORTHO05D000606 3.8e-10 68.9 64 62.5
TPR.G9209 Trifolium pratense HOM05D000207 ORTHO05D000606 3.8e-10 68.9 64 56.2
TAR365G0206 Trochodendron aralioides HOM05D000207 ORTHO05D000606 3.8e-10 68.9 62 58.1
CAN.G1070.9 Capsicum annuum HOM05D000207 ORTHO05D000606 5.0e-10 68.6 62 59.7
CAN.G13570.1 Capsicum annuum HOM05D000207 ORTHO05D013649 5.0e-10 68.6 62 59.7
Phvul.001G162200 Phaseolus vulgaris HOM05D000207 ORTHO05D000606 5.0e-10 68.6 62 58.1
Lj2A1148G46 Lonicera japonica HOM05D000207 ORTHO05D000606 6.5e-10 68.2 62 62.9
TAR362G0461 Trochodendron aralioides HOM05D000207 ORTHO05D000606 6.5e-10 68.2 62 56.5
CANSAT01G1856 Cannabis sativa HOM05D000207 ORTHO05D000606 1.1e-09 67.4 63 61.9
TWI12G0618 Tripterygium wilfordii HOM05D000207 ORTHO05D000606 1.4e-09 67.0 63 60.3
vmacro02677 Vaccinium macrocarpon HOM05D000207 ORTHO05D000606 1.4e-09 67.0 62 59.7
ClCG09G008020 Citrullus lanatus HOM05D000207 ORTHO05D000606 1.9e-09 66.6 64 57.8
Duzib133G1059 Durio zibethinus HOM05D000207 ORTHO05D000606 1.9e-09 66.6 63 57.1
Lalb_Chr20g0107881 Lupinus albus HOM05D000207 ORTHO05D000606 1.9e-09 66.6 62 54.8
Actinidia07308 Actinidia chinensis HOM05D000207 ORTHO05D000606 2.5e-09 66.2 62 59.7
Ciclev10019564m.g Citrus clementina HOM05D000207 ORTHO05D000606 3.2e-09 65.9 62 56.5
MBI10_g13808_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D000606 4.2e-09 65.5 62 59.7
TWI75G1706 Tripterygium wilfordii HOM05D000207 ORTHO05D000606 4.2e-09 65.5 63 58.7
CiPaw.04G188100 Carya illinoinensis HOM05D000207 ORTHO05D000606 5.5e-09 65.1 62 58.1
Lj1A69G69 Lonicera japonica HOM05D000207 ORTHO05D000606 5.5e-09 65.1 62 56.5
Prupe.8G221100 Prunus persica HOM05D000207 ORTHO05D000606 5.5e-09 65.1 62 59.7
Thecc.01G255300 Theobroma cacao HOM05D000207 ORTHO05D000606 5.5e-09 65.1 64 56.2
CSS0036163 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D000606 7.2e-09 64.7 62 59.7
Glyma.19G166000 Glycine max HOM05D000207 ORTHO05D000606 9.4e-09 64.3 65 52.3
Cpa.g.sc165.21 Carica papaya HOM05D000207 ORTHO05D000606 1.2e-08 63.9 76 50.0
Duzib151G0974 Durio zibethinus HOM05D000207 ORTHO05D000606 1.2e-08 63.9 62 58.1
Migut.D00442 Erythranthe guttata HOM05D000207 ORTHO05D000606 1.2e-08 63.9 62 58.1
Manes.12G033900 Manihot esculenta HOM05D000207 ORTHO05D000606 1.2e-08 63.9 62 56.5
PSO063G3266 Papaver somniferum HOM05D000207 ORTHO05D000606 1.2e-08 63.9 66 59.1
Solyc09g066460.4 Solanum lycopersicum HOM05D000207 ORTHO05D000606 1.2e-08 63.9 62 61.3
Sopen09g028190 Solanum pennellii HOM05D000207 ORTHO05D000606 1.2e-08 63.9 62 61.3
SGA_v2.0_scaffold1G00626 Striga asiatica HOM05D000207 ORTHO05D000606 1.2e-08 63.9 62 56.5
VMungo0720G2577 Vigna mungo HOM05D000207 ORTHO05D000606 1.2e-08 63.9 62 51.6
CDE03G0235 Ceratophyllum demersum HOM05D000207 ORTHO05D000606 1.6e-08 63.5 62 58.1
Duzib212G0804 Durio zibethinus HOM05D000207 ORTHO05D000606 1.6e-08 63.5 62 58.1
Thecc.04G256600 Theobroma cacao HOM05D000207 ORTHO05D000606 1.6e-08 63.5 62 58.1
Ca_08684_v3 Cicer arietinum L. HOM05D000207 ORTHO05D000606 2.1e-08 63.2 62 54.8
HanXRQChr04g0108651 Helianthus annuus HOM05D000207 ORTHO05D000606 2.1e-08 63.2 62 54.8
Medtr7g097150 Medicago truncatula HOM05D000207 ORTHO05D000606 2.1e-08 63.2 62 54.8
ECA236G4022 Erigeron canadensis HOM05D000207 ORTHO05D000606 2.7e-08 62.8 62 53.2
Glyma.13G124800 Glycine max HOM05D000207 ORTHO05D000606 2.7e-08 62.8 62 53.2
Lalb_Chr01g0019611 Lupinus albus HOM05D000207 ORTHO05D000606 2.7e-08 62.8 62 54.8
HPP92_012651 Vanilla planifolia HOM05D000207 ORTHO05D000606 2.7e-08 62.8 62 54.8
VMungo1383G0776 Vigna mungo HOM05D000207 ORTHO05D000606 2.7e-08 62.8 62 53.2
FvH4_2g21180 Fragaria vesca HOM05D000207 ORTHO05D000606 3.6e-08 62.4 62 56.5
RcHm_v2.0_Chr6g0287681 Rosa chinensis HOM05D000207 ORTHO05D000606 3.6e-08 62.4 62 58.1
PSO210G2435 Papaver somniferum HOM05D000207 ORTHO05D000606 4.6e-08 62.0 62 58.1
PSO832G1038 Papaver somniferum HOM05D000207 ORTHO05D000606 4.6e-08 62.0 62 58.1
Rhsim13G0036400 Rhododendron simsii HOM05D000207 ORTHO05D000606 4.6e-08 62.0 62 54.8
ATR0763G179 Amborella trichopoda HOM05D000207 ORTHO05D000606 6.1e-08 61.6 68 52.9
Cc01_g18160 Coffea canephora HOM05D000207 ORTHO05D000606 6.1e-08 61.6 67 47.8
MBI18_g27141_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D000606 6.1e-08 61.6 68 52.9
COL.COLO4_15887 Corchorus olitorius HOM05D000207 ORTHO05D013649 7.9e-08 61.2 62 56.5
Gohir.D10G156300 Gossypium hirsutum HOM05D000207 ORTHO05D000606 7.9e-08 61.2 62 56.5
Manes.03G163400 Manihot esculenta HOM05D000207 ORTHO05D000606 7.9e-08 61.2 62 56.5
Potri.005G226700 Populus trichocarpa HOM05D000207 ORTHO05D000606 7.9e-08 61.2 65 53.8
Manes.15G041700 Manihot esculenta HOM05D000207 ORTHO05D000606 1.0e-07 60.8 62 54.8
TAR626G0981 Trochodendron aralioides HOM05D000207 ORTHO05D000606 1.0e-07 60.8 68 52.9
Atru.chr4.2047 Acer truncatum HOM05D000207 ORTHO05D000606 1.4e-07 60.5 62 51.6
Actinidia37522 Actinidia chinensis HOM05D000207 ORTHO05D013649 1.4e-07 60.5 62 54.8
Cpa.g.sc678.1 Carica papaya HOM05D000207 ORTHO05D000606 1.4e-07 60.5 62 50.0
FAN20G0490 Fragaria x ananassa HOM05D000207 ORTHO05D000606 1.4e-07 60.5 62 54.8
Potri.002G036200 Populus trichocarpa HOM05D000207 ORTHO05D000606 1.4e-07 60.5 65 53.8
Atru.chr5.1733 Acer truncatum HOM05D000207 ORTHO05D000606 1.8e-07 60.1 63 54.0
MSTRG.21482 Avicennia marina HOM05D000207 ORTHO05D000606 1.8e-07 60.1 62 54.8
CDE02G0526 Ceratophyllum demersum HOM05D000207 ORTHO05D000606 1.8e-07 60.1 66 50.0
Duzib052G0114 Durio zibethinus HOM05D000207 ORTHO05D000606 2.3e-07 59.7 62 56.5
QL09p039686 Quercus lobata HOM05D000207 ORTHO05D000606 2.3e-07 59.7 62 59.7
Sabra05G0175000 Salix brachista HOM05D000207 ORTHO05D000606 2.3e-07 59.7 65 53.8
arahy.Tifrunner.gnm1.ann1.HYGA42 Arachis hypogaea HOM05D000207 ORTHO05D000606 3.0e-07 59.3 62 51.6
arahy.Tifrunner.gnm1.ann1.L4F40C Arachis hypogaea HOM05D000207 ORTHO05D000606 3.0e-07 59.3 62 51.6
Haze_24653 Corylus avellana HOM05D000207 ORTHO05D000606 3.0e-07 59.3 62 54.8
FAN15G1307 Fragaria x ananassa HOM05D000207 ORTHO05D000606 3.0e-07 59.3 70 52.9
Aqoxy2G03679 Aquilegia oxysepala HOM05D000207 ORTHO05D000606 3.9e-07 58.9 62 50.0
Duzib138G1811 Durio zibethinus HOM05D000207 ORTHO05D000606 3.9e-07 58.9 66 53.0
ECA247G0147 Erigeron canadensis HOM05D000207 ORTHO05D000606 3.9e-07 58.9 62 54.8
Medtr1g069735 Medicago truncatula HOM05D000207 ORTHO05D000606 3.9e-07 58.9 62 53.2
PSO675G0832 Papaver somniferum HOM05D000207 ORTHO05D000606 3.9e-07 58.9 67 49.3
SalBow4G0925 Salvia bowleyana HOM05D000207 ORTHO05D000606 3.9e-07 58.9 64 56.2
CDE04G0405 Ceratophyllum demersum HOM05D000207 ORTHO05D013649 5.1e-07 58.5 62 51.6
Gohir.D09G230500 Gossypium hirsutum HOM05D000207 ORTHO05D000606 5.1e-07 58.5 62 50.0
Gorai.006G253200 Gossypium raimondii HOM05D000207 ORTHO05D000606 5.1e-07 58.5 62 50.0
PSO541G3762 Papaver somniferum HOM05D000207 ORTHO05D000606 5.1e-07 58.5 67 49.3
Phvul.007G191400 Phaseolus vulgaris HOM05D000207 ORTHO05D000606 5.1e-07 58.5 62 50.0
PGR004G2175 Punica granatum HOM05D000207 ORTHO05D000606 6.7e-07 58.2 62 54.8
Glyma.10G181500 Glycine max HOM05D000207 ORTHO05D000606 8.8e-07 57.8 58 55.2
unitig_60.g25745 Utricularia gibba HOM05D000207 ORTHO05D000606 8.8e-07 57.8 65 52.3
MSTRG.18330 Avicennia marina HOM05D000207 ORTHO05D000606 1.1e-06 57.4 62 56.5
Migut.N00278 Erythranthe guttata HOM05D000207 ORTHO05D000606 1.1e-06 57.4 62 51.6
Sabra02G0029400 Salix brachista HOM05D000207 ORTHO05D000606 1.1e-06 57.4 65 52.3
DCAR_018497 Daucus carota HOM05D000207 ORTHO05D000606 1.5e-06 57.0 62 51.6
Glyma.20G208900 Glycine max HOM05D000207 ORTHO05D000606 1.5e-06 57.0 58 53.4
Gorai.011G175100 Gossypium raimondii HOM05D000207 ORTHO05D000606 1.5e-06 57.0 56 58.9
Lj6g0015712 Lotus japonicus HOM05D000207 ORTHO05D000606 1.5e-06 57.0 62 51.6
Medtr1g075880 Medicago truncatula HOM05D000207 ORTHO05D000606 1.5e-06 57.0 62 53.2
Zm00001eb352920 Zea mays HOM05D000207 ORTHO05D000606 1.5e-06 57.0 67 49.3
CARHR003260 Cardamine hirsuta HOM05D000207 ORTHO05D000606 2.0e-06 56.6 79 48.1
Haze_11394 Corylus avellana HOM05D000207 ORTHO05D000606 2.0e-06 56.6 62 53.2
Dinv29849 Davidia involucrata HOM05D000207 ORTHO05D000606 2.0e-06 56.6 60 51.7
FAN27G2006 Fragaria x ananassa HOM05D000207 ORTHO05D000606 2.0e-06 56.6 62 54.8
Lsat_1_v5_gn_9_10540 Lactuca sativa HOM05D000207 ORTHO05D000606 2.0e-06 56.6 62 50.0
Potri.008G167800 Populus trichocarpa HOM05D000207 ORTHO05D000606 2.0e-06 56.6 62 51.6
CsaV3_7G027050 Cucumis sativus L. HOM05D000207 ORTHO05D000606 2.5e-06 56.2 64 54.7
SalBow3G2445 Salvia bowleyana HOM05D000207 ORTHO05D000606 2.5e-06 56.2 60 51.7
Cfa022950 Carpinus fangiana HOM05D000207 ORTHO05D000606 3.3e-06 55.8 62 53.2
Ca_09668_v3 Cicer arietinum L. HOM05D000207 ORTHO05D000606 3.3e-06 55.8 62 51.6
DCAR_012558 Daucus carota HOM05D000207 ORTHO05D000606 3.3e-06 55.8 63 49.2
Glyma.10G005600 Glycine max HOM05D000207 ORTHO05D000606 3.3e-06 55.8 62 48.4
Gorai.007G147700 Gossypium raimondii HOM05D000207 ORTHO05D000606 3.3e-06 55.8 67 44.8
Lj5g0006461 Lotus japonicus HOM05D000207 ORTHO05D000606 3.3e-06 55.8 62 51.6
Potri.010G070600 Populus trichocarpa HOM05D000207 ORTHO05D000606 3.3e-06 55.8 62 53.2
QL05p064573 Quercus lobata HOM05D000207 ORTHO05D000606 3.3e-06 55.8 67 52.2
CANSAT35G1030 Cannabis sativa HOM05D000207 ORTHO05D000606 4.3e-06 55.5 67 50.7
Gohir.A02G039700 Gossypium hirsutum HOM05D000207 ORTHO05D000606 4.3e-06 55.5 62 45.2
Gohir.D02G045900 Gossypium hirsutum HOM05D000207 ORTHO05D000606 4.3e-06 55.5 62 45.2
Gorai.005G050600 Gossypium raimondii HOM05D000207 ORTHO05D000606 4.3e-06 55.5 62 45.2
Oeu033803.1 Olea europaea HOM05D000207 ORTHO05D000606 4.3e-06 55.5 62 53.2
Os05g0511400 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D000606 4.3e-06 55.5 67 49.3
Psat6g061440 Pisum sativum HOM05D000207 ORTHO05D000606 4.3e-06 55.5 62 51.6
Sabra08G0127900 Salix brachista HOM05D000207 ORTHO05D000606 4.3e-06 55.5 62 53.2
SGA_v2.0_scaffold111G31485 Striga asiatica HOM05D000207 ORTHO05D000606 4.3e-06 55.5 60 50.0
VMungo0720G0158 Vigna mungo HOM05D000207 ORTHO05D000606 4.3e-06 55.5 58 55.2
GSVIVG01027833001 Vitis vinifera HOM05D000207 ORTHO05D000606 4.3e-06 55.5 62 50.0
Ca_09862_v3 Cicer arietinum L. HOM05D000207 ORTHO05D000606 5.7e-06 55.1 62 53.2
Glyma.02G003200 Glycine max HOM05D000207 ORTHO05D000606 5.7e-06 55.1 62 50.0
Gohir.A11G131700 Gossypium hirsutum HOM05D000207 ORTHO05D000606 5.7e-06 55.1 67 44.8
Sabra10G0036800 Salix brachista HOM05D000207 ORTHO05D000606 5.7e-06 55.1 62 48.4
Sp1g02780 Schrenkiella parvula HOM05D000207 ORTHO05D000606 5.7e-06 55.1 79 48.1
HPP92_001869 Vanilla planifolia HOM05D000207 ORTHO05D000606 5.7e-06 55.1 68 47.1
AL1G13520 Arabidopsis lyrata HOM05D000207 ORTHO05D000606 9.7e-06 54.3 80 47.5
MELO3C012751.2 Cucumis melo HOM05D000207 ORTHO05D000606 9.7e-06 54.3 64 53.1
Eucgr.H03032 Eucalyptus grandis HOM05D000207 ORTHO05D000606 9.7e-06 54.3 62 51.6
Lalb_Chr03g0037241 Lupinus albus HOM05D000207 ORTHO05D000606 9.7e-06 54.3 62 46.8
PSO017G2602 Papaver somniferum HOM05D000207 ORTHO05D000606 9.7e-06 54.3 67 52.2
Pp3c1_13600 Physcomitrium patens HOM05D000207 ORTHO05D000606 9.7e-06 54.3 73 42.5
TWI73G0153 Tripterygium wilfordii HOM05D000207 ORTHO05D000606 9.7e-06 54.3 62 54.8
HPP92_016676 Vanilla planifolia HOM05D000207 ORTHO05D000606 9.7e-06 54.3 71 42.3


User provided reference genes

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