Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.7e-183 644.4 331 100.0
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.7e-183 644.4 331 100.0
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.0e-182 643.3 331 99.7
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 3.8e-177 624.8 331 97.0
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 2.3e-169 599.0 331 92.4
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 3.0e-166 588.6 331 90.9
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 3.4e-165 585.1 329 89.1
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 4.1e-163 578.2 327 89.0
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 5.4e-163 577.8 327 89.0
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.2e-162 576.6 327 87.5
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.2e-162 576.6 327 89.0
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 1.6e-162 576.2 327 87.5
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 7.8e-162 573.9 325 88.6
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.0e-161 573.5 327 88.7
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 1.3e-161 573.2 327 87.8
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 1.7e-161 572.8 327 86.9
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.9e-161 572.0 327 87.8
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 5.0e-161 571.2 330 86.7
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 6.6e-161 570.9 328 87.2
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 8.6e-161 570.5 327 88.1
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 1.1e-160 570.1 326 88.0
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.1e-160 570.1 327 87.5
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 1.5e-160 569.7 327 87.2
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.9e-160 569.3 327 87.5
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 2.5e-160 568.9 327 87.5
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.5e-160 568.9 330 86.1
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.5e-160 568.9 328 87.2
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.3e-160 568.5 325 88.9
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 3.3e-160 568.5 325 88.9
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 9.5e-160 567.0 327 86.5
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 1.6e-159 566.2 327 86.5
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 1.6e-159 566.2 327 86.5
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 3.6e-159 565.1 327 87.2
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 3.6e-159 565.1 330 86.4
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 4.7e-159 564.7 330 85.8
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 6.2e-159 564.3 327 87.5
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 8.0e-159 563.9 327 85.9
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 1.0e-158 563.5 330 86.4
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 1.0e-158 563.5 327 86.9
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.4e-158 563.1 354 81.4
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 3.1e-158 562.0 326 86.5
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 5.2e-158 561.2 327 85.6
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.8e-158 560.8 327 85.9
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 6.8e-158 560.8 331 86.4
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 6.8e-158 560.8 330 85.2
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 1.2e-157 560.1 327 85.3
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.5e-157 559.7 327 85.6
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.0e-157 559.3 326 86.5
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 3.4e-157 558.5 328 85.7
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.4e-157 558.1 327 85.9
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.4e-157 558.1 327 85.6
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 4.4e-157 558.1 330 86.1
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 5.8e-157 557.8 325 86.8
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 5.8e-157 557.8 331 86.1
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.2e-156 555.8 326 86.2
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 2.9e-156 555.4 330 85.8
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 3.7e-156 555.1 330 85.5
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 3.7e-156 555.1 327 86.2
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 8.3e-156 553.9 327 86.2
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.1e-155 553.5 325 85.5
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.9e-155 552.7 327 85.9
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.9e-155 552.7 327 85.9
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 2.4e-155 552.4 330 85.2
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 2.4e-155 552.4 327 85.9
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 2.4e-155 552.4 330 85.2
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 5.4e-155 551.2 330 84.5
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 4.6e-154 548.1 336 84.2
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 7.8e-154 547.4 327 85.0
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 7.8e-154 547.4 327 85.0
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 1.7e-153 546.2 363 79.3
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 2.3e-153 545.8 325 85.2
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 7.3e-152 540.8 381 75.6
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.2e-151 540.0 327 82.6
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.6e-151 539.7 329 82.7
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 3.6e-151 538.5 327 82.3
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 4.7e-151 538.1 327 82.3
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 4.7e-151 538.1 327 82.3
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 4.7e-151 538.1 327 82.3
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 4.7e-151 538.1 327 82.3
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 4.7e-151 538.1 329 82.4
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 6.2e-151 537.7 327 82.3
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.4e-150 536.6 327 82.3
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 3.1e-150 535.4 327 82.3
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 8.9e-150 533.9 327 81.7
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.2e-149 533.5 327 82.3
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 9.8e-149 530.4 327 81.0
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 9.8e-149 530.4 330 82.4
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 2.2e-148 529.3 331 82.2
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.2e-147 525.4 327 81.3
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.2e-147 525.4 305 86.2
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.1e-147 525.0 327 81.0
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.2e-146 523.5 314 82.8
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 4.6e-146 521.5 327 80.4
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.7e-145 519.6 300 86.7
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 3.0e-145 518.8 325 79.7
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 5.1e-145 518.1 451 63.0
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 3.3e-144 515.4 327 79.8
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.2e-143 513.5 327 80.4
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 2.1e-143 512.7 328 80.2
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 4.0e-142 508.4 328 79.9
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-139 500.4 330 79.4
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 1.1e-139 500.4 330 77.9
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 6.0e-138 494.6 327 76.1
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 5.1e-137 491.5 330 75.5
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 8.9e-134 480.7 326 74.2
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.2e-133 480.3 296 83.1
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.6e-133 479.2 330 77.6
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 7.6e-133 477.6 331 76.7
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.9e-131 473.0 330 75.2
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.2e-131 472.2 373 68.6
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 1.1e-128 463.8 332 75.0
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.7e-124 449.9 279 80.6
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 3.6e-119 432.2 323 71.2
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 1.0e-113 414.1 324 62.3
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 1.8e-110 403.3 324 63.6
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 1.8e-110 403.3 318 62.6
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 9.0e-110 401.0 234 85.9
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.8e-108 395.6 233 84.5
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 9.3e-99 364.4 313 62.3
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.0e-97 360.9 272 68.8
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 4.1e-94 349.0 334 62.0
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 5.0e-92 342.0 227 76.7
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 2.5e-91 339.7 197 86.8
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 3.9e-89 332.4 234 69.7
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 6.9e-86 321.6 333 57.1
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 2.9e-84 316.2 220 76.4
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 2.5e-83 313.2 167 92.8
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 1.6e-82 310.5 220 74.5
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 1.4e-78 297.4 220 73.6
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 1.0e-76 291.2 333 45.6
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 3.1e-70 269.6 163 82.2
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 1.7e-68 263.8 160 82.5
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.9e-67 260.4 267 56.2
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 4.4e-64 249.2 327 48.9
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.5e-59 234.2 131 87.0
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.1e-54 218.0 131 82.4
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.0e-41 172.9 99 84.8
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 2.9e-39 166.8 196 48.5
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 3.7e-39 166.4 160 56.9
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 2.0e-37 160.6 205 48.3
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 2.5e-35 153.7 103 74.8
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 9.5e-35 151.8 80 90.0
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 2.8e-34 150.2 90 84.4
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 3.7e-31 139.8 69 92.8
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.9e-30 137.5 88 77.3
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 3.5e-29 133.3 80 82.5
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 4.6e-29 132.9 89 79.8
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.6e-29 132.9 77 85.7
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 6.0e-29 132.5 74 87.8
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 4.3e-27 126.3 72 83.3
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.4e-25 121.3 75 78.7
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 3.8e-23 113.2 72 79.2
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 4.9e-23 112.8 69 81.2
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 4.3e-19 99.8 65 78.5
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 2.6e-16 90.5 61 77.0
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 1.3e-10 71.6 85 52.9
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 2.6e-08 63.9 48 68.8
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 3.4e-08 63.5 34 85.3


User provided reference genes

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