Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.5e-186 654.8 330 100.0
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 1.4e-150 536.6 333 82.0
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 8.9e-150 533.9 334 81.4
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 4.4e-149 531.6 331 85.2
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 9.9e-133 477.2 335 74.0
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 1.4e-126 456.8 328 69.2
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 8.4e-116 421.0 322 65.2
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 5.1e-113 411.8 327 62.1
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 3.3e-112 409.1 330 63.3
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 4.3e-112 408.7 324 62.0
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 1.3e-111 407.1 327 64.8
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 2.8e-111 406.0 325 62.5
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 3.6e-111 405.6 327 64.5
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 4.0e-110 402.1 321 62.9
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 4.0e-110 402.1 327 60.2
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 5.3e-110 401.7 327 63.3
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 9.0e-110 401.0 323 60.7
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 9.0e-110 401.0 327 60.2
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 4.5e-109 398.7 322 62.4
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 4.5e-109 398.7 329 61.1
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 2.2e-108 396.4 301 65.1
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 3.8e-108 395.6 320 61.6
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 1.4e-107 393.7 338 58.3
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.4e-107 393.7 327 61.8
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 5.4e-107 391.7 326 59.5
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 7.1e-107 391.3 324 59.6
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 2.7e-106 389.4 326 59.2
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 6.0e-106 388.3 326 59.2
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.3e-105 387.1 327 61.8
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 1.8e-105 386.7 327 60.2
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 3.0e-105 386.0 327 61.2
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 3.9e-105 385.6 327 61.5
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 1.1e-104 384.0 318 61.0
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 1.5e-104 383.6 322 60.6
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 3.7e-103 379.0 326 59.5
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 4.8e-103 378.6 322 61.2
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 4.8e-103 378.6 328 60.4
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 6.2e-103 378.3 337 59.3
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 8.1e-103 377.9 330 59.4
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 8.1e-103 377.9 380 53.7
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 1.4e-102 377.1 324 60.8
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 9.0e-102 374.4 323 59.8
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 2.0e-101 373.2 325 58.8
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 2.6e-101 372.9 323 58.5
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 7.6e-101 371.3 328 58.5
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 2.9e-100 369.4 328 58.5
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.9e-100 369.4 328 57.9
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 7.1e-99 364.8 322 54.7
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 3.5e-98 362.5 322 55.9
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 7.9e-98 361.3 326 57.1
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 3.0e-97 359.4 322 55.0
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 5.1e-97 358.6 325 57.5
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 1.9e-96 356.7 326 56.4
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 3.3e-96 355.9 318 56.3
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 4.3e-96 355.5 322 54.0
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 4.3e-96 355.5 323 54.8
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 4.3e-96 355.5 322 54.0
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 7.4e-96 354.8 322 54.3
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 7.4e-96 354.8 328 57.3
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 2.8e-95 352.8 322 54.3
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 6.2e-95 351.7 327 56.3
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 8.2e-95 351.3 326 55.2
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 8.2e-95 351.3 328 55.8
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 1.1e-94 350.9 322 54.7
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 1.1e-94 350.9 294 61.2
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.1e-94 350.9 321 56.1
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 2.4e-94 349.7 322 53.4
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 4.0e-94 349.0 317 54.6
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 4.0e-94 349.0 361 53.2
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 4.0e-94 349.0 328 55.8
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 5.3e-94 348.6 329 54.7
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 6.9e-94 348.2 325 56.0
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 4.5e-93 345.5 317 54.3
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 4.5e-93 345.5 323 55.7
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 7.6e-93 344.7 322 52.5
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 1.0e-92 344.4 324 56.8
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.0e-92 344.4 293 59.4
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 2.9e-92 342.8 326 55.5
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 6.5e-92 341.7 326 55.8
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.2e-91 339.3 326 53.7
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 6.1e-90 335.1 317 52.4
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 6.1e-90 335.1 233 66.5
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 7.9e-90 334.7 322 51.9
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 1.8e-89 333.6 329 53.5
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 1.9e-88 330.1 322 50.9
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.9e-88 330.1 279 59.9
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 3.3e-88 329.3 278 59.7
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 4.3e-88 328.9 323 52.6
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 9.7e-88 327.8 350 49.7
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 9.0e-86 321.2 267 59.6
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 9.0e-86 321.2 318 51.6
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 3.4e-85 319.3 323 52.0
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 3.6e-82 309.3 317 49.5
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 3.6e-82 309.3 317 49.5
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 6.1e-82 308.5 330 50.9
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 1.0e-81 307.8 322 48.4
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 1.0e-81 307.8 322 48.4
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 6.7e-81 305.1 322 50.6
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 2.0e-80 303.5 322 50.3
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 2.2e-79 300.1 322 49.7
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.8e-78 297.0 323 48.9
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 2.4e-78 296.6 321 48.6
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 3.1e-78 296.2 322 48.8
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 6.9e-78 295.0 323 50.8
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 9.1e-78 294.7 324 47.8
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 2.6e-77 293.1 318 48.7
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 2.5e-75 286.6 331 47.1
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 9.4e-75 284.6 328 47.3
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.2e-74 284.3 326 50.9
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 1.6e-74 283.9 322 47.2
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 3.6e-74 282.7 319 48.3
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 4.7e-74 282.3 319 48.6
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 4.7e-74 282.3 332 47.0
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 2.6e-72 276.6 324 47.8
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 1.7e-71 273.9 342 44.2
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 3.7e-71 272.7 325 47.1
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 1.8e-70 270.4 327 46.8
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 5.3e-70 268.9 313 47.0
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 1.2e-69 267.7 186 65.6
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 7.7e-69 265.0 327 47.7
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 2.9e-68 263.1 332 43.7
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 4.7e-66 255.8 230 59.1
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 2.0e-64 250.4 325 42.8
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 4.8e-63 245.7 334 44.3
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 3.1e-62 243.0 325 43.1
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 1.2e-61 241.1 324 46.3
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 1.2e-61 241.1 283 49.1
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 3.2e-59 233.0 489 34.6
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 2.7e-58 229.9 205 53.7
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 3.5e-53 213.0 235 46.4
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.6e-50 204.1 307 39.7
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 3.6e-50 203.0 301 41.9
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.2e-48 198.0 321 38.0
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 4.4e-48 196.1 330 37.9
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 2.2e-47 193.7 186 51.6
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 4.5e-45 186.0 137 65.0
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 5.0e-44 182.6 319 35.7
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 5.5e-43 179.1 276 44.9
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 5.2e-33 146.0 322 33.5
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.8e-33 145.6 113 63.7
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 7.8e-29 132.1 110 56.4
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 3.6e-26 123.2 115 52.2
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 4.4e-24 116.3 157 43.3
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 6.0e-21 105.9 52 94.2
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.0e-21 105.9 79 62.0
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 5.1e-20 102.8 178 38.8
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-19 99.0 188 34.0
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 4.0e-17 93.2 121 49.6
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.5e-16 91.3 243 34.2
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 2.6e-16 90.5 137 43.8
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 1.1e-14 85.1 200 32.5
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.7e-13 80.5 108 42.6
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 8.6e-12 75.5 120 42.5
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 7.3e-11 72.4 117 40.2
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 8.9e-09 65.5 194 30.9
Cre03.g177900 Chlamydomonas reinhardtii HOM05D004681 ORTHO05D005541 1.7e-07 61.2 315 23.5
PRCOL_00000454 Prasinoderma coloniale HOM05D004681 ORTHO05D005541 2.2e-07 60.8 335 23.9


User provided reference genes

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