Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 6.9e-248 860.1 422 100.0
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 1.2e-218 763.1 421 89.1
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 2.2e-209 732.3 422 85.8
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 4.3e-189 664.8 421 81.7
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 2.7e-183 645.6 423 75.9
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 3.0e-182 642.1 423 75.4
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 8.6e-182 640.6 383 82.2
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 2.8e-180 635.6 423 74.0
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 3.6e-180 635.2 423 73.5
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 6.2e-180 634.4 422 74.6
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 5.2e-179 631.3 423 73.8
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 6.8e-179 630.9 423 73.8
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 8.9e-179 630.6 423 74.0
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.5e-178 629.8 423 73.8
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.5e-178 629.8 423 73.8
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 1.5e-178 629.8 421 73.9
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 2.0e-178 629.4 423 73.8
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 1.3e-177 626.7 423 73.5
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.7e-177 626.3 423 74.7
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.9e-177 625.5 423 73.0
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.7e-177 625.2 422 73.2
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.9e-176 622.9 422 73.2
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 5.4e-176 621.3 423 72.3
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 9.2e-176 620.5 418 73.4
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 1.6e-175 619.8 422 73.0
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 1.0e-174 617.1 423 72.3
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.3e-174 616.7 426 72.8
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 4.3e-173 611.7 421 71.7
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 5.6e-173 611.3 423 72.3
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 1.2e-172 610.1 423 71.6
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 2.1e-172 609.4 426 72.5
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 3.6e-172 608.6 423 71.6
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 3.1e-171 605.5 423 72.8
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 4.0e-171 605.1 423 71.2
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 4.0e-171 605.1 421 70.8
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 8.9e-171 604.0 422 71.8
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 1.2e-170 603.6 423 71.9
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 2.0e-170 602.8 453 68.9
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 2.6e-170 602.4 423 70.9
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 7.6e-170 600.9 424 71.5
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 9.9e-170 600.5 419 70.9
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 9.9e-170 600.5 429 68.8
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 1.3e-169 600.1 426 71.8
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 1.7e-169 599.7 429 68.5
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 1.7e-169 599.7 429 68.5
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 2.9e-169 599.0 429 68.8
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 3.8e-169 598.6 423 71.6
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 3.8e-169 598.6 459 67.1
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 4.9e-169 598.2 423 70.0
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 4.9e-169 598.2 423 71.6
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 8.4e-169 597.4 424 70.8
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 8.4e-169 597.4 423 70.7
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.1e-168 597.0 423 70.7
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 2.4e-168 595.9 425 71.3
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 4.1e-168 595.1 422 71.1
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 4.1e-168 595.1 429 70.6
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 5.4e-168 594.7 440 68.9
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 1.2e-167 593.6 423 70.9
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 3.5e-167 592.0 422 69.2
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 4.6e-167 591.7 425 68.9
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 6.0e-167 591.3 421 69.4
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 6.0e-167 591.3 422 69.4
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 5.6e-165 584.7 423 68.8
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 2.8e-164 582.4 423 70.4
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 6.2e-164 581.3 423 69.0
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.1e-163 580.5 423 68.1
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.4e-163 580.1 423 68.1
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 2.4e-163 579.3 423 68.3
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 4.0e-163 578.6 421 69.6
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 6.9e-163 577.8 423 69.7
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 1.2e-162 577.0 421 69.1
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 2.9e-161 572.4 423 67.8
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 6.4e-161 571.2 422 69.7
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 1.6e-159 566.6 423 67.8
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.6e-159 566.6 424 67.0
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 1.7e-158 563.1 423 66.2
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 8.7e-158 560.8 423 66.2
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 8.7e-158 560.8 423 66.2
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 8.7e-158 560.8 423 66.2
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 4.3e-157 558.5 423 66.0
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 1.4e-155 553.5 423 66.9
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 2.4e-155 552.7 479 61.6
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 4.0e-155 552.0 423 65.2
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.4e-154 548.9 423 65.2
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 3.5e-151 538.9 422 66.6
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 7.9e-151 537.7 366 73.5
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 1.8e-147 526.6 321 80.1
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 1.5e-146 523.5 423 64.3
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 1.1e-144 517.3 424 64.4
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 1.4e-144 516.9 427 61.8
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 4.2e-144 515.4 421 62.7
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 2.1e-143 513.1 422 63.3
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 3.5e-143 512.3 422 62.3
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 4.6e-143 511.9 421 62.7
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 7.4e-141 504.6 422 63.3
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 2.9e-137 492.7 355 71.5
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 6.5e-137 491.5 393 65.4
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 8.4e-137 491.1 320 76.2
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 1.1e-136 490.7 319 76.5
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 2.1e-135 486.5 440 58.6
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.9e-134 482.3 422 60.4
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 6.7e-134 481.5 523 51.4
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 3.8e-129 465.7 309 74.8
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.1e-128 464.2 427 57.6
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 2.9e-121 439.5 345 65.8
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 7.9e-119 431.4 315 70.2
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 1.4e-118 430.6 809 36.5
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 1.2e-114 417.5 282 73.4
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 1.0e-102 377.9 423 50.4
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 2.3e-102 376.7 319 58.6
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 1.1e-96 357.8 404 50.7
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 2.5e-96 356.7 411 49.6
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 9.4e-96 354.8 395 50.9
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.0e-94 351.3 392 49.7
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 3.0e-94 349.7 411 49.4
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 5.2e-94 349.0 389 50.6
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 2.0e-93 347.1 424 47.6
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 3.4e-93 346.3 389 49.9
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 9.8e-93 344.7 249 69.5
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.7e-89 334.0 394 48.7
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 5.2e-86 322.4 390 49.0
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 5.2e-86 322.4 342 52.3
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 1.4e-83 314.3 351 50.1
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 3.8e-81 306.2 307 53.1
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 5.0e-81 305.8 308 53.6
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 6.6e-73 278.9 368 45.9
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 1.2e-71 274.6 442 39.1
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 6.6e-65 252.3 431 37.8
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 8.6e-65 251.9 172 71.5
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 7.5e-61 238.8 184 64.1
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 6.6e-57 225.7 309 45.0
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 6.8e-54 215.7 194 57.2
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 7.8e-50 202.2 203 54.2
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 8.4e-36 155.6 388 31.7
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 1.1e-32 145.2 102 69.6
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 2.4e-30 137.5 106 61.3
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 1.5e-29 134.8 142 50.0
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 5.8e-29 132.9 466 28.3
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 7.6e-29 132.5 134 52.2
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 5.0e-12 76.6 62 67.7
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 6.3e-07 59.7 363 21.8
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 1.4e-06 58.5 108 32.4


User provided reference genes

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