Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.2e-205 718.4 810 100.0
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.4e-164 584.3 810 91.9
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 1.3e-56 225.7 198 61.6
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 8.0e-43 179.9 191 53.9
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 5.2e-42 177.2 183 56.3
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 1.4e-39 169.1 197 51.3
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 7.7e-38 163.3 196 49.0
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 1.2e-35 156.0 196 46.9
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 1.4e-34 152.5 196 45.4
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 5.2e-34 150.6 197 44.7
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 1.2e-33 149.4 198 44.9
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 2.0e-33 148.7 197 44.2
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 2.8e-32 144.8 197 44.2
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 1.4e-31 142.5 197 43.1
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 1.8e-31 142.1 196 43.9
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.4e-31 141.7 194 39.2
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 4.1e-31 141.0 299 48.2
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.0e-30 138.7 283 32.5
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 5.9e-30 137.1 178 43.3
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 1.7e-29 135.6 199 37.7
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 3.8e-29 134.4 297 47.5
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 8.6e-29 133.3 204 39.2
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 8.6e-29 133.3 198 42.9
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.6e-27 129.0 604 48.8
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 4.7e-27 127.5 183 39.9
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 4.7e-27 127.5 184 40.2
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.0e-26 126.3 313 51.1
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.0e-26 126.3 148 45.9
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 3.0e-26 124.8 264 37.1
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.0e-26 124.4 313 50.5
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 5.2e-26 124.0 313 50.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 5.2e-26 124.0 148 45.9
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 5.2e-26 124.0 193 35.2
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.8e-26 123.6 299 72.9
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 8.9e-26 123.2 196 38.8
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 8.9e-26 123.2 198 38.9
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 8.9e-26 123.2 161 42.9
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 5.7e-25 120.6 211 37.9
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.3e-24 119.4 220 36.4
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.2e-24 118.6 152 44.1
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 6.4e-24 117.1 196 40.3
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.1e-23 116.3 160 43.1
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 2.4e-23 115.2 170 40.0
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.4e-23 115.2 160 43.1
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 3.2e-23 114.8 176 38.6
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 4.1e-23 114.4 199 38.2
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 7.0e-23 113.6 167 39.5
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 7.0e-23 113.6 157 38.2
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 1.2e-22 112.8 183 41.5
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 4.6e-22 110.9 192 34.9
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 5.9e-22 110.5 166 38.6
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 5.9e-22 110.5 171 42.7
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.0e-21 109.8 155 36.8
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.0e-21 109.8 192 39.1
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.0e-21 109.8 200 35.0
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 2.3e-21 108.6 157 42.0
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 3.9e-21 107.8 141 44.0
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 5.0e-21 107.5 174 38.5
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.1e-20 106.3 140 43.6
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 1.1e-20 106.3 135 45.2
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 2.1e-19 102.1 202 36.6
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 2.8e-19 101.7 331 41.7
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 4.7e-19 100.9 303 24.8
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 8.0e-19 100.1 200 33.5
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 1.4e-18 99.4 161 39.1
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 8.9e-18 96.7 203 34.0
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 5.8e-17 94.0 174 34.5
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 1.7e-16 92.4 203 33.0
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 2.9e-16 91.7 169 34.3
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 2.9e-16 91.7 187 29.4
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 3.7e-16 91.3 334 26.6
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 4.9e-16 90.9 127 44.9
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 4.9e-16 90.9 148 37.2
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 8.3e-16 90.1 172 34.3
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 1.9e-15 89.0 194 30.4
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.4e-15 88.6 152 36.2
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 2.4e-15 88.6 322 45.7
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 3.2e-15 88.2 160 32.5
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 4.1e-15 87.8 194 32.5
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.2e-14 86.3 155 34.2
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.6e-14 85.9 166 35.5
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.6e-14 85.9 171 34.5
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 2.0e-14 85.5 132 34.8
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 2.0e-14 85.5 305 26.9
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 3.5e-14 84.7 94 48.9
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 4.6e-14 84.3 174 35.6
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 7.8e-14 83.6 174 35.6
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 1.0e-13 83.2 194 30.4
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 5.0e-13 80.9 170 31.2
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 8.6e-13 80.1 177 32.2
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 8.6e-13 80.1 151 36.4
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.1e-12 79.7 174 33.9
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 2.5e-12 78.6 132 34.1
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 3.3e-12 78.2 96 45.8
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.3e-12 77.8 152 33.6
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 7.3e-12 77.0 149 33.6
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 2.1e-11 75.5 183 31.1
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 3.6e-11 74.7 132 33.3
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.7e-11 74.3 279 22.6
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 4.7e-11 74.3 188 31.4
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 4.7e-11 74.3 161 32.3
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 6.2e-11 73.9 156 30.8
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.8e-10 72.4 312 22.1
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 1.8e-10 72.4 143 30.1
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 8.9e-10 70.1 192 29.7
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 8.9e-10 70.1 158 32.9
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.2e-09 69.7 298 21.8
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.5e-09 69.3 160 30.6
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 1.5e-09 69.3 158 33.5
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 1.5e-09 69.3 133 32.3
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.4e-09 68.2 328 22.0
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 4.4e-09 67.8 299 22.1
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 1.3e-08 66.2 76 47.4
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 3.7e-08 64.7 127 31.5
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 4.9e-08 64.3 107 39.3
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.4e-07 62.8 99 37.4
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 1.4e-07 62.8 131 32.8
COL.COLO4_22429 Corchorus olitorius HOM05D000173 ORTHO05D003903 3.2e-07 61.6 62 46.8
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 7.1e-07 60.5 191 27.2
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 7.1e-07 60.5 177 28.8
Aqoxy6G01002 Aquilegia oxysepala HOM05D007639 ORTHO05D009509 4.6e-06 57.8 148 34.5
Zm00001eb140410 Zea mays HOM05D026208 ORTHO05D030341 4.6e-06 57.8 298 21.1
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 6.0e-06 57.4 125 30.4
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 7.8e-06 57.0 286 20.6
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 7.8e-06 57.0 94 38.3


User provided reference genes

Program Settings