Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.7e-65 251.9 131 100.0
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.2e-20 103.6 51 100.0
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.5e-20 103.2 54 88.9
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 2.2e-19 99.4 53 90.6
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.6e-17 93.2 91 56.0
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 7.9e-17 90.9 108 47.2
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 7.9e-17 90.9 77 62.3
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 6.7e-16 87.8 77 59.7
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 8.7e-16 87.4 80 60.0
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.9e-15 86.3 76 60.5
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.9e-15 86.3 53 75.5
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.5e-15 85.9 86 54.7
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 3.3e-15 85.5 50 80.0
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 5.7e-15 84.7 85 55.3
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 5.7e-15 84.7 85 55.3
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 9.6e-15 84.0 50 76.0
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 9.6e-15 84.0 75 60.0
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.3e-14 83.6 51 74.5
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.3e-14 83.6 51 74.5
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.3e-14 83.6 85 52.9
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.3e-14 83.6 50 76.0
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.3e-14 83.6 75 62.7
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.6e-14 83.2 50 74.0
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.6e-14 83.2 50 76.0
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.6e-14 83.2 50 76.0
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.6e-14 83.2 85 52.9
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.6e-14 83.2 50 74.0
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.6e-14 83.2 54 70.4
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.6e-14 83.2 85 52.9
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.6e-14 83.2 50 74.0
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.1e-14 82.8 51 80.4
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.1e-14 82.8 51 80.4
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.1e-14 82.8 51 80.4
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.1e-14 82.8 75 61.3
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.1e-14 82.8 50 72.0
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.8e-14 82.4 51 82.4
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.8e-14 82.4 85 52.9
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.8e-14 82.4 50 72.0
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.7e-14 82.0 50 74.0
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 3.7e-14 82.0 82 56.1
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.7e-14 82.0 51 80.4
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.7e-14 82.0 50 72.0
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 3.7e-14 82.0 50 74.0
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 4.8e-14 81.6 50 72.0
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.8e-14 81.6 51 80.4
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 6.3e-14 81.3 50 80.0
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 6.3e-14 81.3 82 56.1
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 6.3e-14 81.3 50 80.0
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.3e-14 81.3 75 62.7
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 6.3e-14 81.3 82 54.9
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 6.3e-14 81.3 50 76.0
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 6.3e-14 81.3 50 80.0
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 8.2e-14 80.9 51 78.4
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.1e-13 80.5 82 54.9
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-13 80.1 80 56.2
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.4e-13 80.1 82 54.9
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.4e-13 80.1 75 61.3
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-13 80.1 75 61.3
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.4e-13 80.1 83 57.8
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.4e-13 80.1 53 69.8
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.4e-13 80.1 86 53.5
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.4e-13 80.1 50 78.0
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.4e-13 80.1 82 53.7
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.4e-13 80.1 54 72.2
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.8e-13 79.7 50 80.0
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.8e-13 79.7 50 80.0
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 1.8e-13 79.7 51 74.5
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.8e-13 79.7 50 78.0
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.8e-13 79.7 75 60.0
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 2.4e-13 79.3 80 57.5
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 2.4e-13 79.3 75 61.3
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 2.4e-13 79.3 75 61.3
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.4e-13 79.3 75 61.3
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 2.4e-13 79.3 75 61.3
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 2.4e-13 79.3 75 61.3
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.4e-13 79.3 75 61.3
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 2.4e-13 79.3 75 60.0
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 2.4e-13 79.3 75 60.0
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.4e-13 79.3 75 61.3
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 3.1e-13 79.0 80 56.2
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.1e-13 79.0 50 76.0
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.1e-13 79.0 53 64.2
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 3.1e-13 79.0 83 54.2
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.1e-13 79.0 48 75.0
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.1e-13 79.0 51 74.5
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 4.1e-13 78.6 50 76.0
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 4.1e-13 78.6 50 74.0
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 5.3e-13 78.2 50 76.0
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 5.3e-13 78.2 50 76.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 5.3e-13 78.2 91 46.2
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 5.3e-13 78.2 118 45.8
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 5.3e-13 78.2 79 58.2
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 5.3e-13 78.2 52 76.9
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 5.3e-13 78.2 51 66.7
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 5.3e-13 78.2 77 54.5
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 6.9e-13 77.8 84 52.4
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 6.9e-13 77.8 102 47.1
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 6.9e-13 77.8 83 56.6
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 6.9e-13 77.8 53 62.3
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 9.0e-13 77.4 45 82.2
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 9.0e-13 77.4 79 53.2
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 9.0e-13 77.4 83 55.4
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 9.0e-13 77.4 50 66.0
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 9.0e-13 77.4 50 74.0
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.2e-12 77.0 85 50.6
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.2e-12 77.0 85 49.4
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.2e-12 77.0 77 57.1
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.5e-12 76.6 85 51.8
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.5e-12 76.6 76 52.6
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.5e-12 76.6 83 55.4
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.6e-12 75.9 53 60.4
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 3.4e-12 75.5 77 54.5
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.4e-12 75.5 51 70.6
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.5e-12 75.1 80 55.0
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 4.5e-12 75.1 81 53.1
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 4.5e-12 75.1 85 51.8
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 5.9e-12 74.7 82 53.7
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 5.9e-12 74.7 83 53.0
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 5.9e-12 74.7 91 44.0
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 7.6e-12 74.3 75 53.3
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 7.6e-12 74.3 75 54.7
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 7.6e-12 74.3 50 66.0
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.0e-11 73.9 50 72.0
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.3e-11 73.6 83 54.2
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 2.2e-11 72.8 77 55.8
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 2.2e-11 72.8 51 62.7
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 3.8e-11 72.0 53 60.4
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 5.0e-11 71.6 51 64.7
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 5.0e-11 71.6 77 54.5
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.4e-10 70.1 50 72.0
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 2.5e-10 69.3 72 58.3
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 2.5e-10 69.3 40 80.0
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 5.5e-10 68.2 88 47.7
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 9.3e-10 67.4 75 53.3
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.1e-09 66.2 50 62.0
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 3.5e-09 65.5 51 54.9
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.0e-08 62.4 50 60.0
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 3.9e-08 62.0 54 55.6
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 5.1e-08 61.6 78 50.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.7e-08 61.2 37 75.7
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.3e-07 58.5 47 59.6
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 4.3e-07 58.5 50 58.0
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 4.3e-07 58.5 51 49.0
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 9.7e-07 57.4 35 71.4


User provided reference genes

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